RNA id: TU2056352


Basic Information

Item Value
RNA id TU2056352
length 394
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1796841
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29027075 ~ 29027468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatgtatacatcattgtcacaatagattgtacctttgttaagttttagccaaatgtgagtggtaccttttttcatttcattcagtgctaagtcctgcttatgccaaattatgattccacctgagtcttggccccgtttaacatttttatgtttgattgatggtagtaaactttctctatagcctgagggacaccgagtatctatgtctccacgacaccatgtttccagtaggattatgatgtcctgtcccttgatgtttttaatcaattctggatttgttgttttataaccaaaatgtgaagagtataggccctggatattccaagagctgatagttaatgatctcatttataataagtgatattcactggtttgagtaaagtacatcggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056350 lncRNA upstream 1402 29024618 ~ 29025673 (+) True G1796839
TU2056346 lncRNA upstream 6479 29020043 ~ 29020596 (+) True G1796835
TU2056162 lncRNA upstream 27282 28999581 ~ 28999793 (+) True G1796685
TU2056160 lncRNA upstream 40202 28986572 ~ 28986873 (+) True G1796683
TU2056145 lncRNA upstream 42849 28977890 ~ 28984226 (+) False LOC110502085
TU2056373 lncRNA downstream 15682 29043150 ~ 29043457 (+) True G1796862
TU2056484 lncRNA downstream 220469 29247937 ~ 29248165 (+) True G1796954
TU2056485 lncRNA downstream 222031 29249499 ~ 29249774 (+) True G1796955
TU2056502 lncRNA downstream 248129 29275597 ~ 29275818 (+) True G1796971
TU2056508 lncRNA downstream 268236 29295704 ~ 29295929 (+) True G1796977
XM_021579436.2 mRNA upstream 16794 28997763 ~ 29010281 (+) False LOC110501700
XM_021579991.2 mRNA upstream 32526 28993333 ~ 28994549 (+) True LOC110502121
XR_005038813.1 mRNA upstream 45874 28980218 ~ 28981201 (+) False LOC110502085
XR_005038811.1 mRNA upstream 50336 28755803 ~ 28976739 (+) False epha6
XM_036959049.1 mRNA downstream 36171 29063639 ~ 29094498 (+) False LOC110501701
XM_036959051.1 mRNA downstream 36171 29063639 ~ 29094498 (+) False LOC110501701
XM_036959050.1 mRNA downstream 36255 29063723 ~ 29094498 (+) True LOC110501701
XM_036959055.1 mRNA downstream 74645 29102113 ~ 29167753 (+) False LOC110501702
XM_036959057.1 mRNA downstream 94856 29122324 ~ 29167753 (+) False LOC110501702
TU2055989 other upstream 16802 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 16802 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 16802 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 42849 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 934959 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 716724 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 896089 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 1473188 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1861193 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1861193 30888661 ~ 30891067 (+) False G1798397

Expression Profile