RNA id: TU2056594


Basic Information

Item Value
RNA id TU2056594
length 683
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G1797056
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29069615 ~ 29072660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGCTCCAGCTCCCGTGCAGTCTGCTGAGACTGCTGCTTCTGTCTGCGGAGCTGAGCGGTCAACTCCTCTACCTCCTTCTGCAACGACGACAGCTCCTGGAGAgacaaacacagttaacactgtgcgcacacacacacacacacacacacacacacacacacacacacacacacacctttgtctTTTGTTCCTTCAGTAGTCTCTCAGCCTGATGGTCTCTGTTCagggtgtctgtctgcctgtgcaGCTCTGCTGTCTGTCCTTCCATCTGTCTCACCGTGCTCCTCAGCGTCTCCATTCCAGTCATCAAGTCCTCTCTCTCCGACCACAGCTGCTCATGctgttgtaCGGCGGTGTTGAGTCGTTTGGTCAGCTCGGAGATCTGTTTCTCAGCtccctccaccttctctctctccttatccagctgctctgtctgtctgtcgtagTCCAACTGTAAgttCTTGTATCCCTCTGCTCCATGAATGATGTCTTTCATTGAGCTGGTCACTTTCTCtcgctcagccttcaacacctccacttcctccttcAGAGACACAGCCTCTTTCCTGCTGGTGTCCAGCTCCTTCCTGGCTTTCACAGCCACTGCCTTGATCTTATTCATCCTCTTATCCTTCTCTTTGCTTTCCTTCTCCAGCAGGGCTGTGATGACGGGATGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056370 lncRNA downstream 28264 29041140 ~ 29041351 (-) True G1796859
TU2056358 lncRNA downstream 37997 29031400 ~ 29031618 (-) True G1796847
TU2056333 lncRNA downstream 59367 29005864 ~ 29010248 (-) False G1796828
TU2056608 lncRNA upstream 16573 29089233 ~ 29089646 (-) True G1797070
TU2056660 lncRNA upstream 85416 29158076 ~ 29159430 (-) True G1797116
TU2056686 lncRNA upstream 122516 29195176 ~ 29195617 (-) True G1797140
TU2056713 lncRNA upstream 171295 29243955 ~ 29244346 (-) True G1797163
TU2056714 lncRNA upstream 172079 29244739 ~ 29244944 (-) True G1797164
XR_005038812.1 mRNA downstream 242907 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 349483 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 521050 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 521050 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 526660 28538705 ~ 28542955 (-) False LOC110501696
XR_005038814.1 mRNA upstream 251485 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 360892 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 360892 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 533403 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 634152 29706812 ~ 29727741 (-) True tnfsf11
TU2056199 other downstream 242970 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 442724 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 630844 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 734994 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 1056925 28009655 ~ 28012690 (-) True LOC110501691
TU2056693 other upstream 139004 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 139004 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 586807 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 765617 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 898898 29971558 ~ 29978535 (-) True G1797936

Expression Profile