RNA id: TU2056696


Basic Information

Item Value
RNA id TU2056696
length 1310
RNA type TUCP
GC content 0.43
exon number 2
gene id G1797146
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29211664 ~ 29243649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTATAAAGCAACTTTATTTCTAAAGACATTCTCCAGCATCATTTATATATTGACCATAAGAATTGTTTCAACTCCAAGTGATATTTGTCAACAGAATACCATAGAAGGTTCTTCCACAACCATAAGATATTATGTCATCCCTCTCCCAAAGTGTCACACAGCAGGTTATAGTTCATCATATTCCTACTTTCGGAGTTTAAGATGAACAAGGTTCGTCTCAATGATTTGTACATTATGAAATCAATGTatacacaaaaacacaccaccacacctaAAAGTATTCAcagggagcaggagagaggaaaaTCGTTCAAATGAACAGAGGTTGGTTCTTAAACAAGGTTCGTCTCAATGATTTGTACATTATGAAATAAATGTatacacaaaaacacaccaccacacctaAAAGTATTCAcagggagcaggagagaggaaaaTCGTTCAAATGAACAGAGGTTGGTTCTTAAACAAGGTTTCTTGTTAATCTCAATGAAGGCTTAATTATGCAAAACAATCCAGTTAGGGAGCTTATGAAGGAACCAGTGTTTTCAACTTTTAATAGAACACATGAAAAGAACCCCCCCACCCAAAAAAGAATTGAATGTATACACAAAAATAAAGTCTGGAGATTCACACAGTCACATGCTGCCCTCAGGGTGGGGCAACACTTATGAAAAGGAGACCATCtctgtctcaaatgacaccctatttccccTGTAGTACACTACCAGAACCCTTAGTGCACTCCACATGGGCTCtgcaaaaaaactaaacatgTTTCACATTACATGAGGTATAGGGTCTCATTTGAGATTTTCCTACTATAGTTGTCCACTCCACAGTTTGAAAGCCTATCACTGTCCAGTCCATGGCCAGAGCGAAGGCCGATAGACGTCCAGTCAGTGACCAGATCTCAGCCCTACAGTtgagatgtcaacagtcagtgaCCAGATCTCAGCTCTACAGTtgagatgtcaacagtcagtgaACAGAACGAAGCTCTACAGTTGTCCACATTCGGTGATGACAATCTTCTTGCTGGGTTGGCCAGTCTTGGTGCCCAGCTTTCCCATGCTGCGAACCACATCCATGCCGTCTCTGACGAAGCCAAAGGCCACATGTTTGAAGTCCAAGTGCTCAGCCTTCTTCAAAGTGATGAAGAACTGGGAGTTGTTGGTGTCTCGGCCGTGGTTGGCCATGGACAGCAGCCCCGGGCCTGTGTGGCGCACGTCAAAATTCTCATCCTCAAACTTGTGACCGTAGATGGATTTCCCTCCTGTCCCATCCTGGTTGGTGATGTCTCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056686 lncRNA downstream 16047 29195176 ~ 29195617 (-) True G1797140
TU2056660 lncRNA downstream 52234 29158076 ~ 29159430 (-) True G1797116
TU2056608 lncRNA downstream 122018 29089233 ~ 29089646 (-) True G1797070
TU2056594 lncRNA downstream 139004 29069615 ~ 29072660 (-) True G1797056
TU2056370 lncRNA downstream 170313 29041140 ~ 29041351 (-) True G1796859
TU2056713 lncRNA upstream 306 29243955 ~ 29244346 (-) True G1797163
TU2056714 lncRNA upstream 1090 29244739 ~ 29244944 (-) True G1797164
TU2056718 lncRNA upstream 6117 29249766 ~ 29250214 (-) True G1797168
TU2056729 lncRNA upstream 25715 29269364 ~ 29269662 (-) True G1797179
TU2056739 lncRNA upstream 49248 29292897 ~ 29293244 (-) True G1797188
XR_005038812.1 mRNA downstream 384956 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 491532 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 663099 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 663099 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 668709 28538705 ~ 28542955 (-) False LOC110501696
XR_005038814.1 mRNA upstream 80496 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 189903 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 189903 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 362414 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 463163 29706812 ~ 29727741 (-) True tnfsf11
TU2056199 other downstream 385019 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 584773 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 772893 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 877043 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 1198974 28009655 ~ 28012690 (-) True LOC110501691
TU2057122 other upstream 415818 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 594628 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 727909 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 827426 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 916585 30160234 ~ 30160686 (-) True G1798781

Expression Profile