RNA id: TU2056718


Basic Information

Item Value
RNA id TU2056718
length 449
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G1797168
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29249766 ~ 29250214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctagacaccttcCTAGAGttgaagttacaacccctccccgttccacaacggccaggGTCTCACTTATCAGTGGATTTCCTGACCGATCtcccccgtctcaggggaacactacggtTTTGGTGGTTGTGGattggttttctaagtcctgccgtctcctcccgttgcccggtctccctacagccctacagactgcggaggcattattcacccacgtcttccggcactacggggtgccggaggacatctcTGATcaaggtccccagttcacgtcccgggtacggagggcgttcatggaacgtctgggggtctcggtcagcctgacctccggtcatcaccccgagagtaatgggcaggtggagagagtgaaccgggagatgggtaggtttctgcagtcgtattgccaggaccggcccaTCGAGTGGTCTAGGTACGTCCCATGGCGGAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056714 lncRNA downstream 4822 29244739 ~ 29244944 (-) True G1797164
TU2056713 lncRNA downstream 5420 29243955 ~ 29244346 (-) True G1797163
TU2056686 lncRNA downstream 54149 29195176 ~ 29195617 (-) True G1797140
TU2056660 lncRNA downstream 90336 29158076 ~ 29159430 (-) True G1797116
TU2056608 lncRNA downstream 160120 29089233 ~ 29089646 (-) True G1797070
TU2056729 lncRNA upstream 19150 29269364 ~ 29269662 (-) True G1797179
TU2056739 lncRNA upstream 42683 29292897 ~ 29293244 (-) True G1797188
TU2056740 lncRNA upstream 43687 29293901 ~ 29294146 (-) True G1797189
TU2056753 lncRNA upstream 66457 29316671 ~ 29316935 (-) True G1797202
TU2056840 lncRNA upstream 177272 29427486 ~ 29427693 (-) True G1797285
XR_005038812.1 mRNA downstream 423058 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 529634 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 701201 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 701201 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 706811 28538705 ~ 28542955 (-) False LOC110501696
XR_005038814.1 mRNA upstream 73931 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 183338 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 183338 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 355849 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 456598 29706812 ~ 29727741 (-) True tnfsf11
TU2056693 other downstream 6117 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 6117 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 423121 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 622875 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 810995 28434915 ~ 28438771 (-) False G1796239
TU2057122 other upstream 409253 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 588063 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 721344 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 820861 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 910020 30160234 ~ 30160686 (-) True G1798781

Expression Profile