RNA id: TCONS_00051591


Basic Information

Item Value
RNA id TCONS_00051591
length 858
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_026475
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32228901 ~ 32290096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGTCAAAGTGTGGAGATCGCAAAGTTTACATCAGTCGGAAGAAGCTGTTCCCGAACTTTCATTCAACAAACTCACAGTGATGGCTGAGGCTCACCAAGCAGTGGCATTTCAGTTCACCATCAGTCCTGAGGGGATCAACCTGCATCTGTCTTACCAAGCCCTCAATCAAATCTACCTCTCCGGATTGCGATCCTGGAAGAAGCGCATCAGCAGGATTAAGAACAGGATCATTAAGGGTGCTTATCCAGCTAGCCCCTCCTCGTGGCTTTTTATTGTCATTGCAATTCTAGCCACGATGTACATGCAGTCCGATCCATCAATGGGTCTCATCGCCAAGATCCAGGAACACCTGCCCCTTAGTCTGTCATTGAGTCCTCAAGGTCAGACCATGCTGTCGGCGCTGCTGTTCAGTACTCTGCTCTGGATGTCTCTCATTCTGACTCTGAGGTTCTGCCTGAAGCTTCTCTTGTCCTACCACAGGTGGATGTTTGAACAACATGGTCATATGTCTACCAAGACCAAAGTGTGGGCGGTTAGTGCTTCATTACTTTCAGCctggtttaaaaaaatacattttcattttttttcttagttcATTCTTTCTTGAAACAATAACAAAAAGGATTTGTGTTCTGAGCAtgtgttcagatttttacttggcCTGCAATACAATACATTAATAAAGCATGCTTATATAGTAGAATTTGTATGTAATCTAATCTATATGTAATCTAGTTTAATATGTtacttattattatgattattactgaacacacatgcatgtacagctatctttataagGACTTCCCACAGATGCAATGCTTTTCATACTGCACAAGCTATATATTTTATCCCC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0009437 carnitine metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-155 Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in carnitine metabolic process and fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in EVL; periderm; and polster. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 73. Orthologous to human CPT1C (carnitine palmitoyltransferase 1C).

Ensembl:

ensembl_id ENSDART00000055295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051588 lncRNA downstream 56997 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051587 lncRNA downstream 56997 32196192 ~ 32222085 (-) True XLOC_026474
TCONS_00053059 lncRNA downstream 57120 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA downstream 83039 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051583 lncRNA downstream 98267 32176346 ~ 32180815 (-) False XLOC_026473
TCONS_00053060 lncRNA upstream 35075 32325134 ~ 32329103 (-) False XLOC_026477
TCONS_00051598 lncRNA upstream 35075 32325134 ~ 32329260 (-) False XLOC_026477
TCONS_00053061 lncRNA upstream 35075 32325134 ~ 32334302 (-) False XLOC_026477
TCONS_00051595 lncRNA upstream 35075 32325134 ~ 32337690 (-) False XLOC_026477
TCONS_00051596 lncRNA upstream 35086 32325145 ~ 32334338 (-) False XLOC_026477
TCONS_00051590 mRNA downstream 3107 32240439 ~ 32275975 (-) False XLOC_026475
TCONS_00051582 mRNA downstream 98249 32172729 ~ 32180833 (-) False XLOC_026473
TCONS_00051584 mRNA downstream 98286 32176846 ~ 32180796 (-) True XLOC_026473
TCONS_00051578 mRNA downstream 108204 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA downstream 108232 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051592 mRNA upstream 4686 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051593 mRNA upstream 8444 32298503 ~ 32299892 (-) False XLOC_026476
TCONS_00051594 mRNA upstream 13522 32303581 ~ 32320543 (-) True XLOC_026476
TCONS_00051597 mRNA upstream 35086 32325145 ~ 32337695 (-) True XLOC_026477
TCONS_00051599 mRNA upstream 66774 32356833 ~ 32363021 (-) False XLOC_026478
TCONS_00051585 other downstream 91697 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 1478424 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1790988 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2408958 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2410350 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 682915 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1134133 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1658610 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1733106 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1745133 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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