RNA id: TU2056845


Basic Information

Item Value
RNA id TU2056845
length 240
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1797290
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29432642 ~ 29432881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caagactcttcctagagctgaccacctggccaaactgagcaatcgggggagaagggccttgggcagggaggtgaccaagaacctgatggtcaccctgacagaccttcagagttcctctgtcgaaatgagagaaccttccagaaagacaaccatctctgcagcactccaccaatcaggcctttatggtagtgtggccagacggatgccactcctcagtaaaaggcacatgacaacccgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056843 lncRNA downstream 1809 29430630 ~ 29430833 (-) True G1797288
TU2056840 lncRNA downstream 4949 29427486 ~ 29427693 (-) True G1797285
TU2056753 lncRNA downstream 115707 29316671 ~ 29316935 (-) True G1797202
TU2056740 lncRNA downstream 138496 29293901 ~ 29294146 (-) True G1797189
TU2056739 lncRNA downstream 139398 29292897 ~ 29293244 (-) True G1797188
TU2056823 lncRNA upstream 711 29433592 ~ 29441041 (-) True LOC110501708
TU2056851 lncRNA upstream 9705 29442586 ~ 29442813 (-) True G1797296
TU2056854 lncRNA upstream 11238 29444119 ~ 29444439 (-) True G1797299
TU2056863 lncRNA upstream 17449 29450330 ~ 29450575 (-) True G1797308
TU2056870 lncRNA upstream 24147 29457028 ~ 29457252 (-) True G1797315
XR_005038814.1 mRNA downstream 107373 29324145 ~ 29325269 (-) True LOC118943585
XR_005038812.1 mRNA downstream 605934 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 712510 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 884077 28538705 ~ 28548565 (-) False LOC110501696
XM_021579450.2 mRNA upstream 671 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 671 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 173182 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 273931 29706812 ~ 29727741 (-) True tnfsf11
XM_021579454.2 mRNA upstream 312488 29745369 ~ 29770849 (-) False LOC110501713
TU2056693 other downstream 188993 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 188993 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 605997 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 805751 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 993871 28434915 ~ 28438771 (-) False G1796239
TU2057122 other upstream 226586 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 405396 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 538677 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 638194 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 727353 30160234 ~ 30160686 (-) True G1798781

Expression Profile