RNA id: TU2057016


Basic Information

Item Value
RNA id TU2057016
length 3026
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1797456
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29577660 ~ 29585719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGCAGACagggtggctggctggcagggagatagagagctctgcctctcctctccttcatgttGGCTTTCTGTGGGCCGCGTTAAAAGAGATAAATGTGCTTCTGCCTACTCCTCtttgctctcctctgctcccctttcgtctgctcccctcttctctccccttctctgctctgctccaacCGGCTCCTGGCTCTGTTTTACACCAAGCTGTTTTTACCTCCCTGCACCACCAAAAGGAGCTCTGCTTTCCAGCTGCTAATCTGAGAATTGGCACAGAACTATTTTGTGCTTGTGCCTACAGGAGATTCAGACAGTGAACAGAAACAAAAGGAAAGCAGGCTAATAAAATGACTCCAGTCAGAATCAGAATAGAAGCTGCTTCCTTTTTGTGATGAAACTAAATTTCTGGGAGCTGAAatggaggggaggtagagggggaggagaaagggggaggaaagaaggagagatgtagagggggaggatagagggagacagagagaagagccaCGGGAGAATTAGGCAATTTGTGTTctacagtcagtctctcctctcgcCTGAAACCGGTTTGTCTTTTCTTCTGTTCTGGCTGACGGCATCCTCGTCTATCTCAGTGTCCCCGGCGCCCTGCGATggagtgtgtttctgtgtgtgaacaCAACCATAGCACTGCCGCGTGCAGCTGGGAGAgatcatgtgtgtgtttgtgtgtgtgcctgcatacgTGCGTTTTGCATGTGCCTACATTCAGAGTTGAAGTGTGTGTGGCCAGGGCCAGCAGCTACTGCTTGGCAACCAGACCCATAGTACCTTTCACCTGAACCCCCCTCCACCCAGTCCTAGGGTTCTTCATCCAAGAACACAACAGACCTACCTAGTCTCAGAGCAAAACATATGATATTTTACAAAATCCATGCCACTACAAGACCAAAAGTATGCTGATCGAACATTTAATTCCAAAATTATGGTCATTAATATTGAGTTGGCCCCCCCTTTCCAGCTATAATggcatccactcttctggggaggctttccactagatgttggaacattgctgcagggacttgcttccattcagccacaagagcattagtgaggtcgggcacctatgttgggcaattaggcctgactcacagtctgcgttccaattcatccctaaAGTGACTGGCTCtgcgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggacctcactttgtgcacggggctttgtcatgctgaaacaggaaagggccttcctcaaactgccacaaagttggaagcacagaatcatctagaatgtcattgtatgctatagcgttaagatttcccttaacTGGAAGTAAGGgtcctagcccaaaccatgagaaacagccccagaccattattattcctccaccaaaatttacagttggcactatatattggggcaggtagcattctccttgcatccgccaaatccagattcatccgtcggagtGCTAGATGGTGAAgggtccaatggcagcgagcctCACATCATTCTGGCCGACGCTTGGTAAATTTGGGCTTGTGTGCGGATGCTCGGctatggaaacctatttcatgaagctcctgacgaacagttcttgtgctgattttGCTTCCAGAGGatgtttggaactcggtagtgagtgttgcaactgaggacagattacTTTTACGTGCTATGCCCTTCAGCgtttccgttctgtgagcttgtgtggcctaccacttcgcggctgagccgttgttgctcctagatgtttctacttcacaataccATTACTTATAGCTGGCCGGGGCAGCTCTAGGAGGGCAGAaacttgacaaactgacttgttggaatgtgacggtgccacattgaaagttacTGACCTCCTCAGtaatgccattctactgccaatgtttgtctatggagattgactTTGTGCTCGaattcactcatttgaagggttgtccacatacttttgttagGTTAGgagtaaaggttagggttaaggttagggttaggagttaagttaaagggttaaggttaggggaagggttagctaacatgctaaatagttgcaaagtagctaaaaagtagtaagcaGTTCTAATTTGCTAAAATGCTGAAGTTGTCCAGAATGAGATTTGAACGTGCACCATTTGGATAGCTAGACGTTCACATTATACATCCGACCAATGACCCTCCATTTGTTTTTGCCTTAATTAACCTTTTTTTTTACtagcaagtcaggtaagaactaATCATTATATACAATGATGGcctgcactgccctatgggactcccaatcacggctggttgtgaaacagcctggatttgaaccagggggtctgtagtgacgcctctagcattgagatgcagtgcctaagactgctgtgccacccgggaggcccctgagTGTCATACCCCCGAGTGTCATACCAAATATAACATTGTCATACCTATTTGAGTGACTCGGATTCACGTAGGCCAATTTAATGTAACCTAACGTAAAGTAACatttcatactaaatggagtggcaCGGATTTGAGTAAAATATTATATgttttgctctgagaccaggctggataGACAGGCTTTCAAGACTGTTTCACCCCATTAACAATTGGCTCCCCTCCAACATGTCGAACACCAACCATTAAAACACTCCCAGTCAGATGAATATTACAGGCGAAAATGTAACAATCCAGATAATATTATGAATATGCTTTGTAGTATACATCAAATGTATATGTACTGTACCCAGTAGCAGagcctctctctctgatgtgAGGGGTCCTCTCATGGCTGCTTCACTCCTCCTGTCTCTGCTGGGGTACAGAGTGGTGGCATAGCCGTTCACtacctacagacacacaaacaacacagtgtTAGTCCTTATAGACACACAAACGCAATGTGAGCTGATGTGTGTGCACTCATCGGGGTAGTGTTCTTTTTATGAGAGAGTGGCTGATGCTACTGATGCTACTCCATTGGGATACCACCCtttccttcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057014 lncRNA downstream 3090 29572282 ~ 29574570 (-) True G1797454
TU2056998 lncRNA downstream 27573 29549495 ~ 29550087 (-) True G1797440
TU2056912 lncRNA downstream 79224 29498175 ~ 29498436 (-) True G1797357
TU2056910 lncRNA downstream 79931 29497528 ~ 29497729 (-) True G1797355
TU2056905 lncRNA downstream 82488 29494808 ~ 29495172 (-) True G1797350
TU2057030 lncRNA upstream 6510 29592229 ~ 29592456 (-) True G1797467
TU2057095 lncRNA upstream 54847 29640566 ~ 29640839 (-) True G1797529
TU2057126 lncRNA upstream 79174 29664893 ~ 29665338 (-) True G1797560
TU2057370 lncRNA upstream 102272 29687991 ~ 29688259 (-) True G1797778
TU2057371 lncRNA upstream 102877 29688596 ~ 29688799 (-) True G1797779
XM_021579449.2 mRNA downstream 136589 29433552 ~ 29441071 (-) False LOC110501708
XM_021579450.2 mRNA downstream 136597 29433552 ~ 29441063 (-) False LOC110501708
XR_005038814.1 mRNA downstream 252391 29324145 ~ 29325269 (-) True LOC118943585
XR_005038812.1 mRNA downstream 750952 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 857528 28720059 ~ 28720132 (-) False trnan-guu-200
XM_021579452.2 mRNA upstream 20344 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 121093 29706812 ~ 29727741 (-) True tnfsf11
XM_021579454.2 mRNA upstream 159650 29745369 ~ 29770849 (-) False LOC110501713
XM_021579455.2 mRNA upstream 159650 29745369 ~ 29770850 (-) False LOC110501713
XM_021579457.2 mRNA upstream 249779 29835498 ~ 29846456 (-) False LOC110501714
TU2056693 other downstream 334011 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 334011 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 751015 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 950769 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 1138889 28434915 ~ 28438771 (-) False G1796239
TU2057122 other upstream 73748 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 252558 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 385839 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 485356 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 574515 30160234 ~ 30160686 (-) True G1798781

Expression Profile