RNA id: TCONS_00004914


Basic Information

Item Value
RNA id TCONS_00004914
length 2809
RNA type mRNA
GC content 0.42
exon number 11
gene id XLOC_002644
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 13305610 ~ 13396720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTCCTTGTAGGAAACACACTGAATTGCCGTGTTTTTCTTCTTGCAGATGCCCGGTTTAGTGTCATGTCTTGGAAATCTAATAGTCACTGGATTCATCATCCTCTTCTGTGAGCTCGTCACATCAGAGATATGGACCAATGAAGTTTCAGATGTCCAGTTCGGTGGACTGGGCTCCAGGGTCACCCTCACATGTGGAGGCTCTCACACCGGGTCTCCAGTGGAATGGCGCTTCAATGGGAGCTCAGTACCACCGTGGCAAACACACGAGGGCTTGCTTACGCTACTGAACACCACACACTCGATGGAAGGTAACTACAGCTGCCATGATGAACAGGGAACTTTACTGCAGTCCATCAAACTGCGCCTGGGACACCCACCTCATTTCGTCAGTGTGTCTTGTCGTGTGCCGAATCATATGAAAATCTCCTGCTCCTGGGAACAAACCAAGAGGACAAACTTGCCCACATCATACAGAGCCTCATACAGTCAGAAGGGCCAGGGCCGCAAGCAAATTCCCAGTGAACCCTGTGAACAGAAGGATACCGGGGTAAATGAGTGCACAATTACAGACCCACCTTTCTGGAGCTCCTCGAAGATCCTGGTGAACATCACTGAAATCAACCCGCTGGGATCTAACTCCACCATCATCCAAATAGATCTCCGTGAACTCTTGAAACCAGATCCCCCAGAAGATGTTCAAGTCTCTCAGGTGGAGGGTGAGCCTACACAGTTACTGGTCCAGTGGAACTGTCCCCCATCATGGCTGGTTGGCATGTCTGCTTTTTCATTGACATATTTACTGCGCTACCGGCCAATTGGCTCCAACTACTGGTCAAAGGTGGACATAGAGTCAGACACTGAGAGCACCAGTCTGATAATAACAGACGCTCTGATTGGTCACCTGCATCAGATCCAGATCAGAGCTCAGGACGCCCTCATCAACCACAGCCAGTGGAGTGAGTGGAGTCACATGGTGGAGGCCAAACCCTGGACAGAACCTCCAAAAGAGCCAACAGAGGAACCGGATTACATACTTCAGTCCTATCCAGTGAGGACAACAGACAAGTCTACAgATTCGTCTTCAAACCATAATGGAAATGTTGGACTGTTGGTTTTGTTGGGGCTGTTTGCAGCGATCATGGTGGCTGTCTTATTAACAATCATCACGCTTCTTTGGGTGAGACAAAGGAAACAAGACAATGTGAAGAAACAAGAACTGACTTCTATGCTGAAGATGAAGTCCATACCAATCTAAAATTTGAGAAGTTGGTCGTCTCCAGTTCGGTCCTCATATGGGAATCACCACCACTGCCACTGCAGCTAACAGCCTTCATTACCCACAATCCACCTCTCTCTTCTTAGCCAATTAGAAGATGCACTCAGTCCCATCAACTGTGAACATGTACAATCTACAAATGTAGCACAATGCAATGGAAAAACATGGATTTCTCTTGGTTTTCCCTCTCACTGTCTTGGCTTTTAACCGCTCACAGCAAGTACCTGGatgatgaaaaacattttttaatcttCCTCCTCCTCGATGTTTCTCAGCTCACTCCACTGGACTCTAGACACATGGATGCTGTTGAAAGCCAGCAGCAAACAGGGCATTATGGGTAAAGTGGTGAAAAGTAGACACTCTTCCACCTTTAGACAGCTGCTATCTGTGGAGAATGGTGTTTTTCTGTCTTGCGCTTCAGTGATGGACACGCTGCTCTTGCTTTGGAGAAACAAAGactgttttgtctgtttttttccttCGATTTGGAGCAGGTggacacatctgcagctgatcgCTTTCGTCTGCTTCATTTACAGCCAGATGTGGGATCTACAGTTCTCCATTATAAACTCCTGTTAAACGCATTTCTCATCAGCCTTGGAGTTCATGTCTTGAAAATAAACACCAGCTgggatgttttttcttttttttttcttaaagctgGTGCTCAAGAAACTAAAAGACCTTcagtgcacttattattattagtttttttttacttttattttattttaaggcaagacactccaggtaaaaattattattttttatttgatcttATATTTTTAGCATCTTTAAACATTTTAGCTTTGAACAAAGTGTCACTTTTTAGTCTAATGCacaggtgtcaattccagttcctggaaggctgcagctctgcatagtttagttttaaccctaattaatcacacttGATCTTTAAACTATGTCCCTTAAATAGTcatttaggcttgtttgaaacctagaGGTAAGTGTTTTGGAGCACGGTTAGAACTTTTCAGatctgcggcccttcaggaactggaattgacacTTGTGGTCTAATGCAAAGAAAGCATccaaaaatacacttttaagtgtttcttttgttgCACTTTATCAAATTCTGTCCTAAGATTTCAATTACAAGACCTATTTTTGAAGGCCATTTtctcaaattgttttttttttcctacagtgATCCATAAATCAGCAACACATACACTAAACTTCACACTTTTATTCATATCAATATTCTGAAGGTTTGTACAGAGCTATTTGTTCATTAATCATAACCTTTTTAATTATTCTAGAATTATAAAAAAGTGTACAGTATTTTATCAAAAGTatggattgaaaaaaaaatagatttttcaaaTTATTTCTGTAAGAACTTTTACTCAAATGCTGATTTTACATCAAATGCAGATCATTATAGTTCACTATCTCTTATTTACTCATGGAATGTTTATTTCCACTCATGCAAAATTTTCGCTTGAGTTTAATTGTTTGAACTAGCGTGGTAGatgcaattgaaaaaaaaaa

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0004921 interleukin-11 receptor activity molecular_function
GO:0019955 cytokine binding molecular_function
GO:0019970 interleukin-11 binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04640 Hematopoietic cell lineage
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-030131-5942 Predicted to enable interleukin-11 binding activity and interleukin-11 receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of cell population proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in cranium and frontal-parietal joint. Orthologous to human IL11RA (interleukin 11 receptor subunit alpha).

Ensembl:

ensembl_id ENSDART00000135941

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006012 lncRNA downstream 3637 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 1407035 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 1972497 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 2517961 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 2591383 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006013 lncRNA upstream 1687175 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 1689141 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 1738579 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 1738579 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 1739763 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004912 mRNA downstream 66243 13236100 ~ 13239367 (-) True XLOC_002641
TCONS_00004907 mRNA downstream 126533 13080092 ~ 13179077 (-) False XLOC_002640
TCONS_00004911 mRNA downstream 126624 13141161 ~ 13178986 (-) True XLOC_002640
TCONS_00004910 mRNA downstream 126690 13090156 ~ 13178920 (-) False XLOC_002640
TCONS_00004908 mRNA downstream 126757 13084974 ~ 13178853 (-) False XLOC_002640
TCONS_00004916 mRNA upstream 116299 13460130 ~ 13772847 (-) False XLOC_002645
TCONS_00004917 mRNA upstream 131999 13475830 ~ 13772861 (-) True XLOC_002645
TCONS_00004921 mRNA upstream 919853 14263684 ~ 14488518 (-) False XLOC_002649
TCONS_00004923 mRNA upstream 1077133 14420964 ~ 14488472 (-) True XLOC_002649
TCONS_00004924 mRNA upstream 1181353 14525184 ~ 14536399 (-) False XLOC_002650
TCONS_00004913 other downstream 427 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004903 other downstream 1541171 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004879 other downstream 2973183 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 2976056 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 3767284 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004918 other upstream 263196 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 268302 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 587738 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004922 other upstream 982995 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004928 other upstream 1388452 14732283 ~ 14732399 (-) True XLOC_002653

Expression Profile

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