RNA id: TCONS_00053061


Basic Information

Item Value
RNA id TCONS_00053061
length 521
lncRNA type sense_over
GC content 0.49
exon number 3
gene id XLOC_026477
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32325134 ~ 32337695 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTACAGGAGCGCACAGAGCACAGGCACGCATACACACCAACGCCATAGACCATGTCGGACTCAGAGACTGCAGCTCCTGCCGAAACCCCTGTCCCAGCAGCCTGTGTGGCCATCAAAGCAGATTTAGACAAATGGAGAAAGGTGAGGATGGTTGTAAGGATCTGATGGAGGCGTTTGCTGCCTGTGTGAAGAGCAATGCTGAGGCATCATGAGGAGCTCAACATGCAGGAAAAGGGTTAACTGCACTGAGTCCTCCACCTTCCCAGCATTCCCTGCAGCTCATGGCACTGGACTAAATGATGGGGTTTGGCTGCAGAGACCATTCTTGTGTCTCTTCCCTTCTCCACCCCTCCTGTGAAGCTTAAATGGATTCCTTCTACCACCAACCTTCCCTCCCCTTTTTGTGGCTGATTGTATTGATCTGATTTGTAGATCGTTCGGAGCTCATGAATTGATGTAAATGATGTGTCTCAGATGCTTACAAAATggaataaagattttaaaatggtCCAATGTGT

Function

GO:

id name namespace
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014808 release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0070296 sarcoplasmic reticulum calcium ion transport biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic reticulum biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051591 lncRNA downstream 35075 32279082 ~ 32290059 (-) True XLOC_026475
TCONS_00051588 lncRNA downstream 103049 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051587 lncRNA downstream 103049 32196192 ~ 32222085 (-) True XLOC_026474
TCONS_00053059 lncRNA downstream 103172 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051602 lncRNA upstream 124881 32459183 ~ 32460973 (-) True XLOC_026479
TCONS_00053062 lncRNA upstream 230892 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00051605 lncRNA upstream 230892 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00052475 lncRNA upstream 236457 32570759 ~ 32571628 (-) True XLOC_026481
TCONS_00051608 lncRNA upstream 264342 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051594 mRNA downstream 4591 32303581 ~ 32320543 (-) True XLOC_026476
TCONS_00051592 mRNA downstream 4597 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051593 mRNA downstream 25242 32298503 ~ 32299892 (-) False XLOC_026476
TCONS_00051589 mRNA downstream 35038 32228901 ~ 32290096 (-) False XLOC_026475
TCONS_00051599 mRNA upstream 22531 32356833 ~ 32363021 (-) False XLOC_026478
TCONS_00051600 mRNA upstream 26209 32360511 ~ 32362872 (-) True XLOC_026478
TCONS_00051601 mRNA upstream 124418 32458720 ~ 32472155 (-) False XLOC_026479
TCONS_00051603 mRNA upstream 201684 32535986 ~ 32541033 (-) False XLOC_026480
TCONS_00051604 mRNA upstream 202617 32536919 ~ 32541072 (-) True XLOC_026480
TCONS_00051585 other downstream 137749 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 1524476 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1837040 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2455010 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2456402 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 638672 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1089890 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1614367 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1688863 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1700890 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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