RNA id: TU2057477


Basic Information

Item Value
RNA id TU2057477
length 1365
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1797869
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29870701 ~ 29872087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTATTCATTATAAAAGTCAAAGTCTAAACAGTACAACTGTATAGATACAGAGGATACATACAGggtggagaaaaagtgtgacaacAACATTTCATTTATTCACCTTTCCTCTCTGGAGAATTGCACCACAAAATCAAGTTGAAAAGAAACTGATGTAACAATAGTAAGCCAGTCAATGTTTTCCAGTAACAATCTTTAAGACAATTATTTTAGTATACAGTGATATACTAGTCGACATTAGAAAACCAGAAGAGAACCGTGAGAGGGAACATTCTAGAATGCATGAAATGTTTAGTTGATAATGCACAATATGTCATTGTCTCCTTTCCTGCTCTTACAGCATGgtagagtgaaacagagagagcgtCAGGAAGACAATGATCAGTCTTCTTCACAAACCCATTATACActctagaatgtgtgtgtgtgtgtgtggtgttttaaAAAAACAGCTCTAACAACAGATACGATAACTGCACAGCAGCCAAGataaaaggagagagatgaggaggacagacagactgttGGTTCTATCCCACATCAGAaagacaggacacacagagatCAACTAAGACACATAGACAACATCTTCAAATTAGAGTACAACTCAATAGTACAAAACAAGCAATTCAAAATGAACTATTCTTCGAAATATGTTAATGATTATTAGTTTGAATTTGCATTAATTACTCTTTCACACATCGTTTTAAACTGAATCTATTTACGTATCTTGACATGCAGCTTGATCCTGCTAATTCCATAGATTCTCATGCAAAATGTTCATTAGTGAAAAAGTCAAGCCCTTACCCTACTCGGAGGGGTTAATGTCAGTAGTTCCTAGAGTTAATGTCAGTGGTTCTAGACAGACACAGTGTCAGTAGTTTGACACCAGCAGCGTCTATAGTACTGTACCTAAAGATGTGAGAGCACAGAGAACAGTCATTACCTCACTCTGTTTCTTTGACTTCATCCTCCTCCCACAGGATTTGTACTCCCAGGACTAATGGAGAAGCCATGCACAAAATATCATGTGAACATAGAGGTCACTTTTCCAGAGTCAACTGTCTGTATGTACATAAAGAGGCCAACCCCTTCAGCAGGCTGCAGCAGAATGTAGTGTGGGTCATAATATTCTATTATTCCTTAATTTAGTCATTACATATTCAGAATCACCCACAATCTGGACCACCAGAATCACCCACACATGGACCACCAGCCTGCTGGTACACAGGCCTAgcccatggtgtgtgtgttagtccaCTCCCAGGGCTCGGAGTTGTCGCTCTATCTCGTCGTCAGAGATCTGCGTTTTCCGTTTAGGAGAAGCAGTAGGGAGACTCTTCCCTGCTGCTGGGGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057466 lncRNA downstream 3508 29858718 ~ 29867193 (-) True G1797863
TU2057452 lncRNA downstream 34581 29835843 ~ 29836120 (-) False LOC110501714
TU2057376 lncRNA downstream 124178 29745424 ~ 29746523 (-) True LOC110501713
TU2057375 lncRNA downstream 125784 29743316 ~ 29744917 (-) True G1797781
TU2057373 lncRNA downstream 126794 29743316 ~ 29743907 (-) False G1797781
TU2057551 lncRNA upstream 97884 29969971 ~ 29977559 (-) True G1797935
TU2057575 lncRNA upstream 127628 29999715 ~ 29999982 (-) True G1797958
TU2057578 lncRNA upstream 129183 30001270 ~ 30001578 (-) True G1797961
TU2057579 lncRNA upstream 130926 30003013 ~ 30003216 (-) True G1797962
TU2058410 lncRNA upstream 195342 30067429 ~ 30067655 (-) True G1798731
XM_021579457.2 mRNA downstream 24245 29835498 ~ 29846456 (-) False LOC110501714
XM_021579455.2 mRNA downstream 99851 29745369 ~ 29770850 (-) False LOC110501713
XM_021579454.2 mRNA downstream 99852 29745369 ~ 29770849 (-) False LOC110501713
XM_021579453.2 mRNA downstream 142960 29706812 ~ 29727741 (-) True tnfsf11
XM_021579452.2 mRNA downstream 250793 29606063 ~ 29619908 (-) True dnajc15
NM_001124646.1 mRNA upstream 1173 29873260 ~ 29876558 (-) True pou1f1
XM_021579462.2 mRNA upstream 68052 29940139 ~ 29993639 (-) False LOC110501718
XM_036959070.1 mRNA upstream 68052 29940139 ~ 29993640 (-) False LOC110501718
XM_021579461.2 mRNA upstream 68052 29940139 ~ 29995646 (-) True LOC110501718
XM_036959589.1 mRNA upstream 421023 30293110 ~ 30322552 (-) False mxra5b
TU2057451 other downstream 27521 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 209754 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 627052 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 627052 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 1044056 28826287 ~ 28826645 (-) True LOC110501699
TU2057553 other upstream 99471 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 198988 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 288147 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 614902 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 1089000 30961087 ~ 30963534 (-) False LOC110502090

Expression Profile