RNA id: TU2058411


Basic Information

Item Value
RNA id TU2058411
length 690
RNA type TUCP
GC content 0.55
exon number 1
gene id G1798732
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30071075 ~ 30071764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTACTGTAACTTACATGTTGAGTGGTAGTTGGACCTTGGCTTGAGCCAGCAGTTCTGAGGTGACTGAAGCCATTCTGGGAGGAACCAGAACTCCGACTGAGGAGGGAGTGGGACCGGGGGGACCGGGGGGAGAGTCCTGTATTCGTGCAGCAGCCCTGGGGTCAGAGGAGCTGATGAGGACAGGGTGGGAGATCTCCATGCTGTGTCTGTTGTTGAGCTGGGCTGTCCGCTGCGTCACACTCAGAGCTGTGAACGAGTGGCGCTTCTTAGCGtttttcttcccctctccccctcttctctcctcctcttgcctctGGAGGGCACCATTGCCACTTCCTGCAGAGGATGGGTCAGGGGAGGGGCCAAGGGAGCAGGGACCCAATGGGAGGCCGGGAGACGGATCAAAGCTGGGGCCAGGGACGGGATTGGATGTCGGCTTGTCAATCTCCATCAACTGTTTGGCTGTTTCATTTAGCTAaagtggagaggagatgagaggaaaggagacgagaggataggagacgagaggagacgaaaggagacgagaggagaggaaaggatgaGATCCAAATCATTGAATTGAATTGCTTTAGACTGctttactacacactgctggcTCTCAGAGCACGCCTTCTGCTGTTGGCAGAACTTCAAACCAGACAAAAAAgatcacacacaccccacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058410 lncRNA downstream 3420 30067429 ~ 30067655 (-) True G1798731
TU2057579 lncRNA downstream 67859 30003013 ~ 30003216 (-) True G1797962
TU2057578 lncRNA downstream 69497 30001270 ~ 30001578 (-) True G1797961
TU2057575 lncRNA downstream 71093 29999715 ~ 29999982 (-) True G1797958
TU2057551 lncRNA downstream 93516 29969971 ~ 29977559 (-) True G1797935
TU2058456 lncRNA upstream 61974 30133738 ~ 30137205 (-) True G1798769
TU2058458 lncRNA upstream 68951 30140715 ~ 30140938 (-) True G1798771
TU2058462 lncRNA upstream 75218 30146982 ~ 30147193 (-) True G1798775
TU2058396 lncRNA upstream 76106 30147870 ~ 30149445 (-) True G1798717
TU2058467 lncRNA upstream 87541 30159305 ~ 30159593 (-) True G1798780
XM_021579461.2 mRNA downstream 75429 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 77435 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 77436 29940139 ~ 29993639 (-) False LOC110501718
NM_001124646.1 mRNA downstream 194517 29873260 ~ 29876558 (-) True pou1f1
XM_021579457.2 mRNA downstream 224619 29835498 ~ 29846456 (-) False LOC110501714
XM_036959589.1 mRNA upstream 221346 30293110 ~ 30322552 (-) False mxra5b
XM_021579473.2 mRNA upstream 292841 30364605 ~ 30382857 (-) True LOC110501725
XM_021579476.2 mRNA upstream 327411 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 327411 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 327674 30399438 ~ 30402064 (-) False mab21l3
TU2057553 other downstream 92540 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 227895 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 410128 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 827426 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 827426 29211664 ~ 29243649 (-) True G1797146
TU2058468 other upstream 88470 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 415225 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 889323 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 889323 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 905130 30976894 ~ 30995302 (-) True G1799132

Expression Profile