RNA id: TU2058396


Basic Information

Item Value
RNA id TU2058396
length 1576
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1798717
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30147870 ~ 30149445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACAAGTAAAAGTTATACATGTATATGGGTATAACTGACGGTGGCTACcaatagtggctaatatttaacatgaaaCAAATCGTAAAAAAATACAGTGAAAAGTCTGAGCATATAATTCAAACTCTAGACATCATAAATCAACTTGGTAGGTTTGGCGCTATACGTTCATAGAGGCCTATAGTTTGGGTCTCCAAATGTCATCCTTGTAAGTTATAAGGACAGCATTTCATAAACTGCACCGTGGAAAAggtgatatgttgatatgcttcagtttgctgccatactgtagtactggtttcacatttgttttCAGCAATCATAAGGTAAAATAGATCTAAAACAATTGTCATTTATATTTACTCATTTAcctcacttttttttaaatacagtgcatggagaatggcgTTATTTAGATTGGAAAAAATAAAGTTGTTTCTTGACCTTAATCGTGGTTTCATCACtcgtaaaggtggtggaattatgagggaattaagtcaagCATACagcgtatctgtagacacacctccaccccACTTTCCTTTCTTTGATCTCCACCCCAAAGGAATAGTGGGTGAATAGCATGATATTtcatgcttaaattcaaggtcagaataatGTGAAGAGAAAAGTGCATAACAAGAGAATAAGGTTCCATTTACGCGCATTTAGCTCGGTCGGAATCCCCCTACTGAACACAAGGTTCATGTCTTCCAgagaggtgtgtgagtgtgtagctGTCACACTGCATGCACTTTGGGTTGATTATTCTGGGTAGGGTCAGGTTAGTATGGACTAAACCAAGGTTATCTGCTGTATAGGGTCCACATACCTCATTGGGACAACAGAGTACTttgcaatagggtgccattttgtacaCAGCCCATATAATACACCCTTAGGGTTTGTATTAAATGGTTCTGTCCCAGTCGGATGGGAAAACACACAGGGCTCCACTCAATCAAACACAGTAGTCCTACAGTCCATGGTCAAATGAATCACAGAATGGTTCTGGTTTCTGAAAACACAACTTCCCAGCTGTGAGAATCCCATCATAGGTACATGTAGATGATTCCAGATGTCAAAATAAGAAGTGTGTGTTTGCAGAAGTTTGTATGAACATCACCATGATGTGTTTGATTGAATTCCAGACTGTTGACATACAGAGGGGGCTACAGGAGAATAGACAAGATATTGATCATGTTGATTTAAAATgtgcaaaatatattttggttgaAAACGTATCTCTTGCTTTGCTGTGCCTGAACTCCCTCAAATGTAGAATTCGACAGAATTTCCATGTAATTTAGCTGTAGTAAAACTGAACTGTCTTGTCTTGTTATTGTCATATTTCTGTAAAAGCCTTTGATAAACAGTGGTCTGCTGTTTGAGAAGTATGAAGACCTTATACCTGCAGGAGAAAGACTTCTGTTCACTATGAAGACTGTGTCATATGGAGATTATGGTTAGTGTGAATATGGAGGTCAGTGTTTGTCAATATGAAGAGTAtttttatgtggttgtgatgttctCCTCCTTTTCTACCACCCAAAACCTCAATAAACATTTCATTGTGCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058462 lncRNA downstream 677 30146982 ~ 30147193 (-) True G1798775
TU2058458 lncRNA downstream 6932 30140715 ~ 30140938 (-) True G1798771
TU2058456 lncRNA downstream 10665 30133738 ~ 30137205 (-) True G1798769
TU2058410 lncRNA downstream 80215 30067429 ~ 30067655 (-) True G1798731
TU2057579 lncRNA downstream 144654 30003013 ~ 30003216 (-) True G1797962
TU2058467 lncRNA upstream 9860 30159305 ~ 30159593 (-) True G1798780
TU2058469 lncRNA upstream 11540 30160985 ~ 30161204 (-) True G1798782
TU2058474 lncRNA upstream 17795 30167240 ~ 30167452 (-) True G1798787
TU2058477 lncRNA upstream 20468 30169913 ~ 30170121 (-) True G1798789
TU2058478 lncRNA upstream 20983 30170428 ~ 30170707 (-) True G1798790
XM_021579461.2 mRNA downstream 152224 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 154230 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 154231 29940139 ~ 29993639 (-) False LOC110501718
NM_001124646.1 mRNA downstream 271312 29873260 ~ 29876558 (-) True pou1f1
XM_021579457.2 mRNA downstream 301414 29835498 ~ 29846456 (-) False LOC110501714
XM_036959589.1 mRNA upstream 143665 30293110 ~ 30322552 (-) False mxra5b
XM_021579473.2 mRNA upstream 215160 30364605 ~ 30382857 (-) True LOC110501725
XM_021579476.2 mRNA upstream 249730 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 249730 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 249993 30399438 ~ 30402064 (-) False mab21l3
TU2058411 other downstream 76106 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 169335 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 304690 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 486923 29659467 ~ 29660947 (-) True G1797556
TU2056696 other downstream 904221 29211664 ~ 29243649 (-) True G1797146
TU2058468 other upstream 10789 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 337544 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 811642 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 811642 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 827449 30976894 ~ 30995302 (-) True G1799132

Expression Profile