RNA id: TU2058498


Basic Information

Item Value
RNA id TU2058498
length 297
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1798810
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30204075 ~ 30204371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taGCAATATCAGCAAATGATTGCTGTTTGGACCGTCAGTATTCCAAAACACATAAAAAATAAATTGATCgttaaggcctgcagtgtgaacaaggcaaATGCTTTTAAAACCAAATTATCCCCCTCCTCGATTGATAATACCAAGTGAATCATTATCGTCAAGACCAGTGAACTGTTTGGCACTccttcacagacagacacacttatTTATCATGTGGAATAGGGAATCTTGTCAGTTCTGCTGCAGAAAATTCCTCCAGCACCAAGGTCAATGCCATGTGCAAAGGAAGGATTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058497 lncRNA downstream 789 30201041 ~ 30203286 (-) True G1798809
TU2058478 lncRNA downstream 33368 30170428 ~ 30170707 (-) True G1798790
TU2058477 lncRNA downstream 33954 30169913 ~ 30170121 (-) True G1798789
TU2058474 lncRNA downstream 36623 30167240 ~ 30167452 (-) True G1798787
TU2058469 lncRNA downstream 42871 30160985 ~ 30161204 (-) True G1798782
TU2058501 lncRNA upstream 7127 30211498 ~ 30211721 (-) True G1798813
TU2058509 lncRNA upstream 89072 30293443 ~ 30294440 (-) True mxra5b
TU2058512 lncRNA upstream 92292 30296663 ~ 30296920 (-) True G1798824
TU2058554 lncRNA upstream 154867 30359238 ~ 30359802 (-) True G1798864
TU2058558 lncRNA upstream 198837 30403208 ~ 30404719 (-) True si:dkey-67c22.2
XM_021579461.2 mRNA downstream 208429 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 210435 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 210436 29940139 ~ 29993639 (-) False LOC110501718
NM_001124646.1 mRNA downstream 327517 29873260 ~ 29876558 (-) True pou1f1
XM_021579457.2 mRNA downstream 357619 29835498 ~ 29846456 (-) False LOC110501714
XM_036959589.1 mRNA upstream 88739 30293110 ~ 30322552 (-) False mxra5b
XM_021579473.2 mRNA upstream 160234 30364605 ~ 30382857 (-) True LOC110501725
XM_021579476.2 mRNA upstream 194804 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 194804 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 195067 30399438 ~ 30402064 (-) False mab21l3
TU2058468 other downstream 43389 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 132311 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 225540 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 360895 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 543128 29659467 ~ 29660947 (-) True G1797556
TU2058565 other upstream 282618 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 756716 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 756716 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 772523 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 834822 31039193 ~ 31042216 (-) True LOC110501748

Expression Profile