RNA id: TU2058565


Basic Information

Item Value
RNA id TU2058565
length 2909
RNA type TUCP
GC content 0.38
exon number 3
gene id G1798869
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30486989 ~ 30519672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catTAATAAACAGAATATTCCTCATTTAAATTcatatgggttaaatggaatagtaactgaaaATCGGAATACTGACTCTAGGCCTATACCACTCACATgtagtgtaatataatattaacacCTACTGAATtatgcatttcttgcagtaaaatgatacaataaatgttagttttgtcTCTTGAGAAAATTTGAATGTGTTGTTATGACATTGTTCTGCCTCCAGACAGTTTTTCAAACacatgaacacaaatacaaacaccAATAGTTCCACAGTTTTGGAGTTATTGCGTTTTCTCCCTGGTTCCTAAACCAAACAGACAACTATACCGGTGTTAACTACATTAATAATGCATTCATGCTATCTATGTAAGACATGATTCTGGTGAGCACTACAATATTTAGTCATGACAGACGAGAAGCTGCATGGATCTAACTATAGTTGACAAACAAATGGCCAACCAAATCTCAGAAATTATAGGCACAAACGTGTCTAAATTAGGGGTGAAAGTAGCTAGTAGGCTATACGGTCCAGTACGGAGTATCAGCAAAATAAACTATCATGGTGGATTGAATTGCACTGGTAGCCTACTTTTTAAAGTGATTtctttgacaatcagatgaaaacatcatcacACAACACCAATGATATGTTTTATTGAGCCTGTGCAGACCGTGGAAAACAGTAAATGGAAGAGGATGTTTACACGCCACAGATTACCGTCTAAGATCAGCATATCCCAGGCATCTTATACGGGATTCTCATAACCGGGATACAAGCTTTTTCAGATTATTGTAAACGGAATATGACGTTTATATGCATCAACTCAAAAACAGAATACTTGAGTATCCCGAATAATAACAggatattggtgtgcatgtaaatgtCGTCAGTGTTAAAAAGACGTAGGCCTATTTGGTAATTGAAGAAAAACTGATTTTCAGATGGGTAGATGTCACATCACTGCAAACGGAGTTGATTGAGCTGCAAAGATGGTGCTTGCAGCTGATGTCCCAGTTCTCAAGTAACTGGCACACGCCGTACAGCTGTCAACCGAAGTCAGCATGCATGTGCTCAGCTGCCACAAGGAGTTGCAAGAGCACTATGGGACAAGCACATcacagccggccaaaccctcgaTTGTGCACTAtacatgggtctcccagtcgcgacacagcccgggatcgaacccagatctgtagcgacacctctaacactgtgaagcagtgccttagaccgctgcgccactcaggaagcCCTCCACAATTAACTTCATTAAAAACAAATACCGCACCAGGCTCACCAGTGTCTCCGAGTTGCTCTCATGCACACCATTTGTGCCAAATTTCAAAGCATTGGCAGGAGACAAAAAGTGGAATTtctctcatcaaatcaaatcaaatgtatttgtcacatacacatggttagcagatgttattgcaagtgtagcgaaatgcttgtgcttctagttccgaccatgcagtaatatctaacaagtaacataacctaacaattccacaacaactaccttatacaagtgtaaaggaatgaatatgaatatgtacatacgagtacataaaaatatataaatgagtgatggccgaatggcataggcaagatgcagtagatggtatagagtacagtatatacatacgagatgagtaatgtagggtatgtaaacatataaagtggcattgtttaaagtggcttgtgatacattacatcaagatggcaagatgcagtagatggtatagagtacagtatatacatatgagatgagtaatgtagggtatgagaacattatataaagtgacattgtttaaagttgtcacgccctgaccttagagatcctttttagaataagaatagctgacaaattcacccaaatgtacatttctctcgtgtactttctctttttctctcttttaaatccccattttgggtaacacgcgccaCAGTGTGTTGGCccattatactaagttctaatcaatagcctagaatgtgtttttgtgtatgtatatattttatcatcattttagctttctagtaaataaatactcaactaagattggtgtggtaagaactcattggtgagacccgggtccgtgcagattcacggattatgcgacgttcagaacgagactgTAGAGTTAACCGATTAATTAGCGGCtcttgtaaaatcgatattctgatattctttgagttaatttgggaaatagaaactcaataaaactaattttcccatggtgccccaggttaatgttAATAATTACTTGATTTAGTTCATCACGCAATTAAAAACCTTTAATCATTCAATGAGCAACAGTCACGACGCAATATACGTCAAGATTTTTCGGGTTATTGTAAATGGGATATGACGTTTATATGACTCAACTCAAGAATAGAATACTTGAGTATCCCGAATAATAACAGGATATTGGTGTGCATATAAACATCATCAGTGTTAAAAATTAGGCCTATTTGGTAATagtaacatttaaaaaacaccTGTGCAAAACCATTTTTAAGTGTGTTTTCTAAAAGCATTAGTTTACCATAATTAGGCATTCAAAATGTTTATTAAAAAACATAAACTAAAACCTTAACTGAGTGCTTAACCTAAATCCATGAATCAACTATCAATAAATACAGATTCAATCAATCTATAAGAATAATAGCTCATCATCCTCCTCGGGAACCTACATCAGAACAACTTAGACAGCCATTTCACAACCATTCCTCCTACTTTGGGAATTATTCCTGGAAGGAACAAGGCAGCTGCAGTCCCAACAGTATCCAGAGCTGTGCTCATAAATGAGGGGTTTTTCTCTTCCTCTTGTGCCTTCGCACCCTTAAGGGCATCTATCTCTCTTTGCATTTGGTGTGCTCTGTCATCAAACCCTTGCCGGTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058609 lncRNA downstream 61155 30425573 ~ 30425834 (-) True G1798910
TU2058558 lncRNA downstream 82270 30403208 ~ 30404719 (-) True si:dkey-67c22.2
TU2058554 lncRNA downstream 127187 30359238 ~ 30359802 (-) True G1798864
TU2058512 lncRNA downstream 190069 30296663 ~ 30296920 (-) True G1798824
TU2058509 lncRNA downstream 192549 30293443 ~ 30294440 (-) True mxra5b
TU2058688 lncRNA upstream 90263 30609935 ~ 30610365 (-) True G1798989
TU2058838 lncRNA upstream 421654 30941326 ~ 30943931 (-) False G1799126
TU2058836 lncRNA upstream 422614 30942286 ~ 30943931 (-) True G1799126
TU2058909 lncRNA upstream 437068 30956740 ~ 30956989 (-) True G1799189
TU2058915 lncRNA upstream 445055 30964727 ~ 30964949 (-) True G1799194
LOC110502089 mRNA downstream 27450 30456834 ~ 30459539 (-) True LOC110502089
XM_036959094.1 mRNA downstream 72920 30403202 ~ 30414069 (-) False si:dkey-67c22.2
XM_036959095.1 mRNA downstream 73165 30403202 ~ 30413824 (-) False si:dkey-67c22.2
XM_021579476.2 mRNA downstream 84054 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA downstream 84054 30399175 ~ 30402935 (-) False mab21l3
XM_036959102.1 mRNA upstream 22611 30542283 ~ 30551963 (-) False LOC110501729
XM_036959101.1 mRNA upstream 22611 30542283 ~ 30552050 (-) False LOC110501729
XM_036959103.1 mRNA upstream 24224 30543896 ~ 30552051 (-) True LOC110501729
XM_036959105.1 mRNA upstream 175332 30695004 ~ 30702123 (-) False esd
XM_021579488.2 mRNA upstream 175332 30695004 ~ 30702692 (-) True esd
TU2058468 other downstream 326303 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 415225 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 508454 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 643809 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 826042 29659467 ~ 29660947 (-) True G1797556
TU2058911 other upstream 441415 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 441415 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 457222 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 519521 31039193 ~ 31042216 (-) True LOC110501748
TU2061092 other upstream 2184128 32703800 ~ 32704323 (-) True G1801195

Expression Profile