RNA id: TU2058850


Basic Information

Item Value
RNA id TU2058850
length 2369
RNA type TUCP
GC content 0.50
exon number 16
gene id G1799132
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30976894 ~ 30995302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGATGTCTTTATTTTCAGTCTGAAAGCAAAATGGTCTCTAATTAAAATTGAAAACAATATCATTAATAGCATCAATTAAAGAAATAAAAAGTAAAGTTAGAAAGAGCTTAATCTCGTATCAAAATAAGATGCTCGACTTTCTGATATCTGTGGTATATTTCTAGTATTATCTATTTTTATCTGCTCTTTGCTATATTAGGCCTGAGTTTTGAATCCCTGATTTCCTGACATACTAGCTATATTATTGAAATTGTCTTGTGAGCTAGTATCCTCTTTTCCCTGATTCTGGTTGTTGTGCTGATAACAGCTTCAGGTGATGTGTTCTGTGGTGTCGTGACCCCTACACCCTCTTCATGCCCCGGGCCATCAGGCAGGCGAACACCGTCATCACCATCTTAGGTTTGACCTCCACTAGGTCCTCAGGCAGGGCGTACACCCGCGCTCCGATCTTCCTGGCCATGGAGATGGCATACTTGGCGTTATTGAGCTTCTCCTCCTCAGTCAGGTCCTCCACTTTGATTAGATCATAGCGGATAGAGCCTGGCTGGATGGCATCAATCAGGTCCAGGACTGGCATACTGGTGACAATGGACCCATCCTTGAATCCAGAGATGGTGCCTTTGCCAGCCTGTGTGAGTGTATCGTTGACCCAGGTGACGATGGTGTCGTCATTCACCTTCTGCCCATCACCAAGCTCCTCCAGAATATTCAGTGTGTAcCTCCTCATCAGCTGCCACAGCAGGGCCTGGGTGAGTTTTCGGTTGCCTTCATTCAGGTCCTGTCCAGCGATGCCAACCAGGGAGAACTTGGCCTCCTTCTTCCCCAGCTCCACTGCATAGTTACAGTTCTCCAACTTCTTCATGTTGCTGCCCAGTTTGGAGTAAGGGGGTTTGTTTACTCTGTCCCAATCCACTGGCACATTTATCTTCTCATAGAGCTGGAAGATGACCAAAGCATCATCTATGTCCACATAGAGGTGGTTGACACGAGGGTTGACCCCCAGTGAGTTCATCCAGTTCCTGAAGGTGCGCTCCTCTCTGGTTTCACCCTCGATGGAGCTCCAGTCGATGTCCTGGTTCTCAGGCTTcttcagggcagggtacttgTTGAACAGGTTGGCAATGTATGCTAAGTTTAGCTTAGGGTTGCCGCGGACCACGTCGGTTGCCGTGACGAACTGCCGGCAGCCCAGACGGTCAGCCTGCTCCAACATGCACTCTGCTCTCTTTATGTCCTCTTTCTCCCTTATCCCTGAAATGTCAATGGCAATAGGAGGGattccctcctcatctcccttagGGGCCACTTGGTTCAGGATGTTGTAGTAGGCCTTGGAATCCTTTATGTCAGAGCTGAAGTTGTTGATCTTGGAGCAGCCGGCCTCCTCTAGGTGATAGTTGGCCCAGCGCAGCAGCAGCTCCTCTGGGGAAAGCTTCATCAGGTCTTCCAGGCTCTCCCCATCCCTCAGCAGGGCTATcagagcttcgttCCTGCTGATCTCGATGTCAGCAAACAACCCGATCTTGATGACTTGCCAGAGCAGGCCCAGGACCAGATGCTGTCTGCCTTCCTTCAGGTCCTCTGCTCCGATGTTCACCACGTGGCAGCCAATGGCCGACGCAGAGTTCAGAGCCAGGTTCAGATTCTCCTGGATGGTGAAGGGTGTGAGCTTCTTCTTGTTGATGGTTCTTTCATCGATGGTGTCCGGAACAGACTGGTTGATCATCTTACATAAAACGATCCCATCTCCGACAGCGGTGAACAGGTCATTAGTGGTGGGGTCCATGGGGAGGACATGTTTGCAGTCTGGGTCTTTCTCCAAGGCCTTATTCACCCAGTTCACAAAAgccaccttctcctcctCTGAGTAGGAGTGCTGTGTGCCTGACTGCTCTGAAGTTCCTGCTACGGCATAGATGCCCTCCTTCTTGTTGATGGCTTTCTTGAAGGTCTTAGCAACTTCTGTACTCTTCAGTCCATGGACCACATTAGCAAACTCGCCGAAGGTGACTTTGCCGTCATGCAGGTCTCCTGTCTTGGTGAGATCCTGGATGATCTCTCTGACTCTGTATCCCGGCAATGGCAGGTTGGCAGCTTTGAACAGGTCATTGAGCTCTTCTGTGCCAATGTGGCCATGAGAGTCCACATCGATCTTAGCAAAGGCTTCTCTCAGTTCTTCCAACTCATCTTGAGAAATCTGTGGTGGAGCAGCCATTTTGTGGGATCTGAGGGAGGTGAGTTGACTGGCGGATctgtctgtgagtctgtctgtgtcacTTTCCTTCCTTCAGTGTGTCTGCTGCTCTCACTGCTTGACAGGCAGGCAGTGCACTGTCTCTCCCTCAGAAGTCAAGCGACAATGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058920 lncRNA downstream 1715 30974877 ~ 30975179 (-) True G1799199
TU2058918 lncRNA downstream 3639 30972860 ~ 30973255 (-) True G1799197
TU2058916 lncRNA downstream 6854 30969810 ~ 30970040 (-) True G1799195
TU2058898 lncRNA downstream 11079 30965466 ~ 30965815 (-) True LOC110501745
TU2058915 lncRNA downstream 11945 30964727 ~ 30964949 (-) True G1799194
TU2058828 lncRNA upstream 5270 31000572 ~ 31003643 (-) False G1799125
TU2058830 lncRNA upstream 5270 31000572 ~ 31003643 (-) False G1799125
TU2058827 lncRNA upstream 7523 31002825 ~ 31003643 (-) True G1799125
TU2058935 lncRNA upstream 38005 31033307 ~ 31033531 (-) True G1799213
TU2058938 lncRNA upstream 40318 31035620 ~ 31035859 (-) True G1799216
XR_002470245.2 mRNA downstream 9145 30965268 ~ 30967749 (-) False LOC110501745
XR_005038819.1 mRNA downstream 9145 30965268 ~ 30967749 (-) False LOC110501745
LOC110502090 mRNA downstream 13291 30960714 ~ 30963603 (-) False LOC110502090
XM_021579493.2 mRNA downstream 63318 30908672 ~ 30913576 (-) True LOC110501740
XM_021579490.2 mRNA downstream 68373 30888653 ~ 30908521 (-) True LOC110501738
XM_021579497.2 mRNA upstream 22 30995324 ~ 30999592 (-) False LOC110501744
XM_021579498.2 mRNA upstream 22 30995324 ~ 30999592 (-) True LOC110501744
XM_021579499.2 mRNA upstream 9397 31004699 ~ 31022949 (-) False LOC110501746
XM_021579501.2 mRNA upstream 9397 31004699 ~ 31022949 (-) True LOC110501746
XM_021579504.1 mRNA upstream 44588 31039890 ~ 31042279 (-) False LOC110501748
TU2058911 other downstream 13360 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other downstream 13360 30961087 ~ 30963534 (-) True LOC110502090
TU2058565 other downstream 457222 30486989 ~ 30519672 (-) True G1798869
TU2058468 other downstream 816208 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 905130 30071075 ~ 30071764 (-) True G1798732
TU2058841 other upstream 43891 31039193 ~ 31042216 (-) True LOC110501748
TU2061092 other upstream 1708498 32703800 ~ 32704323 (-) True G1801195
TU2060961 other upstream 1764556 32759858 ~ 32777777 (-) True G1801071
TU2061278 other upstream 1955165 32950467 ~ 32953670 (-) True G1801352
TU2061248 other upstream 1963020 32958322 ~ 32960485 (-) False G1801331

Expression Profile