RNA id: TCONS_00052475


Basic Information

Item Value
RNA id TCONS_00052475
length 795
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_026481
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32565194 ~ 32572052 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttacatgCAGATGTTAAAGACACACTTATGTTTTATGACTAAATGGACATGAGGGGAGTAAAATGCAGGGAAAAAACAGCAACTGAAGAAATGAAAGTGAAATAAACTGAAACAACTAGAAAACAAAACCACTCAAATGAGAGGGAAATCAGAGGCATTTGTCCTCCCTCAGCCCCCCCCAAACCCCGTCCAGCGTCATCTGTAAATCAGACACTGGTACAAGGATTGGGAGAGACGGAGATGGACTGTAAGACAGATCAATACTACAGATTTTAACATTTGAACTGAAGCCTAGCAAGTTGTCTGGATAAACACTGACAGAAAAAGTTAGTTATTAGTCAAATTAATAAGCACAAAATTAACTTGTATATGTAATTATACAAGAGAGAAAGAGACTTTGAGAGAGATAAATTAAAGATATCACAGTTTGCAAACATTACCGTGGAAAGTCCAAACATTTTCAAGAGTCACAATGATGTACATCATTAGGAAATTACAGACATAGTATCAGTAcagaagttaaaataaaatatgtagttaCCACAAAGACCCTCCGAGCAGCAACATCCTTGTCATCCAAAGTTGACAAACCCTCAAGCATTTTCTTAACAATCATATTGCTCCGTGCAGCTATCTTTCCCTTCTGTGAAGCTTCATCTGCCCTCTGATGTCTTACCTCAGAGTGATTTCCTCTTTAGCTGAGATGATTTGCTCTCGAGTCTGCACCCTCCTTCACTTGCTCTCTTCATCTTGTCTGTCTTTATTTAGCTCTGCACTCTCTTCTTCCTGCCTC

Function

GO:

id name namespace
GO:0018120 peptidyl-arginine ADP-ribosylation biological_process
GO:0003956 NAD(P)+-protein-arginine ADP-ribosyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051602 lncRNA downstream 109786 32459183 ~ 32460973 (-) True XLOC_026479
TCONS_00051595 lncRNA downstream 233069 32325134 ~ 32337690 (-) False XLOC_026477
TCONS_00051596 lncRNA downstream 236421 32325145 ~ 32334338 (-) False XLOC_026477
TCONS_00053061 lncRNA downstream 236457 32325134 ~ 32334302 (-) False XLOC_026477
TCONS_00051598 lncRNA downstream 241499 32325134 ~ 32329260 (-) False XLOC_026477
TCONS_00051608 lncRNA upstream 27016 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00053063 lncRNA upstream 283533 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051626 lncRNA upstream 352911 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 512360 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 512360 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00051604 mRNA downstream 29687 32536919 ~ 32541072 (-) True XLOC_026480
TCONS_00051603 mRNA downstream 29726 32535986 ~ 32541033 (-) False XLOC_026480
TCONS_00051601 mRNA downstream 98604 32458720 ~ 32472155 (-) False XLOC_026479
TCONS_00051599 mRNA downstream 207738 32356833 ~ 32363021 (-) False XLOC_026478
TCONS_00051606 mRNA upstream 15382 32587010 ~ 32596394 (-) False XLOC_026482
TCONS_00051607 mRNA upstream 15385 32587013 ~ 32590164 (-) True XLOC_026482
TCONS_00051609 mRNA upstream 31628 32603256 ~ 32637678 (-) True XLOC_026484
TCONS_00051610 mRNA upstream 36152 32607780 ~ 32611833 (-) True XLOC_026485
TCONS_00051611 mRNA upstream 241420 32813048 ~ 32817274 (-) False XLOC_026486
TCONS_00051585 other downstream 383374 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 1770101 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2082665 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2700635 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2702027 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 401346 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 852564 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1377041 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1451537 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1463564 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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