RNA id: TCONS_00051612


Basic Information

Item Value
RNA id TCONS_00051612
length 1471
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_026486
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32813048 ~ 32818607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTAAGGTTGGGTCTATAATTAGCAAGGGGCCTTCGTCAGTATATAAGCCCCTCAAGTACAGGACACTACGCGGCTTCAGACTTCTCTTCTTGATCTTCTTAGACTTCACACATACCGTCTCGACATGGCACCCAAGAAGGCCAAGAGGAGGGCAGCAGGAGGAGAGGGTTCCTCCAACGTCTTCTCCATGTTTGAGCAGAGCCAGATTCAGGAGTACAAAGAGGCTTTCACAATCATTGACCAGAACAGAGACGGTATCATCAGCAAAGACGACCTTAGGGACGTGTTGGCCTCAATGGGCCAGCTGAATGTGAAGAATGAGGAGCTGGAGGCCATGATCAAGGAAGCCAGCGGCCCAATCAACTTCACCGTTTTCCTCACCATGTTCGGAGAGAAGTTGAAGGGTGCTGACCCCGAAGACGTCATCGTGTCTGCCTTCAAGGTGCTGGACCCTGAGGGCACTGGATCCATCAAGAAGGAATTccTTGAGGAGCTTTTGACCACTCAGTGCGACAGGTTCACCGCAGAGGAGATGAAGAATCTGTGGGCCGCCTTCCCCCCAGATGTGGCTGGCAATGTTGACTACAAGAACATCTGCTACGTCATCACACACGGAGAGGAGAAGGAGGAGTAAACTACCTTGGAATCAAGAAAACGAAGAGAAGAACATGCATCCCTCACAGCTTAATCCTCCCAGTCTGTTGTCTGGCCTTCTCTAACTTTTGTTTTTCTTCCTCCCTTTCTTGCTTTCTACCATCGTTGTTACTCCAAGCACTTACACTCTCCATCTTACCAAAGACTTGTCTCGCTGGGACTGAATTGGGAGGGTGGAGAGGAACACGACCACAGTGTCTGTCGAGTGGGGACATTGGATTGTTTTCAATAAAATGAACATCATTTCTGTATCTCTcacattctctctttctctctgtttctcACTCGTTACCCGCGACCACCTCTCTTTCATTTCAGTCAAGCTTGCATGAAAGTCGCTGCTTCTTCTGCTGCAGTCTTAGGAGTTGAAACGAAGGCATCTATAGTTTGGGGCTGAAACATCTCTCTAGATCAATGTGGAAGAGTGCTCACTCTGAGGGGGAAAGAAGCACGATGGAGTGATCTCACTCTATAATAGAGGAACCAGTCATCATTCTCATTTCCTCCTCTGGTGGTTGActaaaaagagaaagagaaaatgagGGTTTTGTGCTGAGTGAGTTTAGCCTCCTAAAAGCGATGCCGAGCTCATCACAGAGGGAGTGAGAGGGACAGACCATCCTAGGAAGAGAGGAGAGCAGGGACTGAAAGAAAACATAACCTCTTCACTCCCCCTCTCCCCTCCTCTTCTCTATTTCTCTGtccatcttttcttttttctttttttgctttctgCATCTGGGCCTGCTTTGCTCTGCCAAACCTCTTCTGTAACCAATAAAAGACACAAACTGTGAATAAAACATCTTTTTGTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990712-15 Predicted to enable calcium ion binding activity. Is expressed in caudal fin; esophagus; musculature system; segmental plate; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).

Ensembl:

ensembl_id ENSDART00000075465

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051608 lncRNA downstream 209857 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 240996 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 241189 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00052475 lncRNA downstream 241420 32570759 ~ 32571628 (-) True XLOC_026481
TCONS_00051602 lncRNA downstream 352075 32459183 ~ 32460973 (-) True XLOC_026479
TCONS_00053063 lncRNA upstream 36554 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051626 lncRNA upstream 105932 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00051645 lncRNA upstream 265381 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 265381 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 481587 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051609 mRNA downstream 175370 32603256 ~ 32637678 (-) True XLOC_026484
TCONS_00051610 mRNA downstream 201215 32607780 ~ 32611833 (-) True XLOC_026485
TCONS_00051606 mRNA downstream 216654 32587010 ~ 32596394 (-) False XLOC_026482
TCONS_00051607 mRNA downstream 222884 32587013 ~ 32590164 (-) True XLOC_026482
TCONS_00051604 mRNA downstream 271976 32536919 ~ 32541072 (-) True XLOC_026480
TCONS_00051613 mRNA upstream 2598 32821205 ~ 32831429 (-) False XLOC_026487
TCONS_00051614 mRNA upstream 6702 32825309 ~ 32831971 (-) True XLOC_026487
TCONS_00051615 mRNA upstream 36550 32855157 ~ 32859335 (-) False XLOC_026488
TCONS_00051616 mRNA upstream 51578 32870185 ~ 32873641 (-) True XLOC_026489
TCONS_00051617 mRNA upstream 71189 32889796 ~ 32902265 (-) False XLOC_026490
TCONS_00051585 other downstream 625663 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2012390 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2324954 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2942924 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2944316 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 154367 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 605585 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1130062 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1204558 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1216585 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU311582 True 1799 TUCP 0.46 5 CI01000069 4129128 ~ 4133378 (+)
tiger barb (Puntius tetrazona) TU28700 False 1554 lncRNA 0.47 7 NC_056701.1 12246208 ~ 12249997 (+)