RNA id: TU2065110



Basic Information


Item Value
RNA id TU2065110
length 237
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1804981
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36009883 ~ 36010119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCATAAGGGAGAGCATTCACAGCCTAAACAAACTTAACAATTTCAATTTCACAGTTTCAATTAGCATTCACAGCCTCCACTTGTGTACTCTGTGTGTTGATCTTCTGTGGCTGAGGTCAGGACCACAGGAGAGTCTGTCAGCTCTAAATGCTCTTTGGAGTCATCACACCACAGATCCCAGATCCCACCGCTCCACCAAATGACATTCTCCCCACAGCACAGTGGTAACAGGGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2065103 lncRNA upstream 24195 35985460 ~ 35985688 (+) True G1804974
TU2065102 lncRNA upstream 24850 35984819 ~ 35985033 (+) True G1804973
TU2065100 lncRNA upstream 26239 35983442 ~ 35983644 (+) True G1804971
TU2065091 lncRNA upstream 40973 35968542 ~ 35968910 (+) True G1804962
TU2064946 lncRNA upstream 182000 35824088 ~ 35827883 (+) True G1804830
TU2065117 lncRNA downstream 9981 36020100 ~ 36020367 (+) True G1804988
TU2065124 lncRNA downstream 22823 36032942 ~ 36033271 (+) True G1804995
TU2065126 lncRNA downstream 26108 36036227 ~ 36036433 (+) True G1804997
TU2065132 lncRNA downstream 35254 36045373 ~ 36045601 (+) True G1805002
TU2065077 lncRNA downstream 49070 36059189 ~ 36059648 (+) True LOC110502095
XR_002470255.2 mRNA upstream 194971 35783183 ~ 35814912 (+) True LOC110501798
XM_021579634.2 mRNA upstream 229339 35769181 ~ 35780544 (+) False LOC110501797
XR_002470251.2 mRNA upstream 249364 35740432 ~ 35760519 (+) False LOC110501795
XM_021579637.2 mRNA downstream 233036 36243155 ~ 36247834 (+) True LOC110501801
XR_005038827.1 mRNA downstream 329635 36339754 ~ 36345450 (+) False LOC118943606
XR_005038825.1 mRNA downstream 329638 36339757 ~ 36345450 (+) False LOC118943606
XR_005038828.1 mRNA downstream 330400 36340519 ~ 36345450 (+) False LOC118943606
XR_005038826.1 mRNA downstream 330406 36340525 ~ 36345450 (+) False LOC118943606
TU2064995 other upstream 134431 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 250457 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3095701 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 3635702 32367636 ~ 32374181 (+) True LOC110501767
TU2058268 other upstream 4712464 31293552 ~ 31297419 (+) True G1798597
TU2065354 other downstream 353477 36363596 ~ 36363930 (+) True G1805191
TU2065389 other downstream 424881 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 2069747 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 2289008 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 2289008 38299127 ~ 38316253 (+) False G1807306

Expression Profile