RNA id: TU2065306



Basic Information


Item Value
RNA id TU2065306
length 230
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1805149
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36301850 ~ 36302207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTTATAGCCAGGTATGCCCTACAGCAGTATAAACTTCCCCCATTTTACAGCCAGGTATACCCAACAGCAGTATAAACTTACCCCATTTTAATAAATTCTCTGTGGCCTTATTCTCCTTCAGTTTAGCCTCCTGGTCATTGGCTCTGTTCCAAACACACAGCCTTTTCAGCTTCTTCACAGTCTGTATTCAGTGGAGCACACCAGTGAGTCTAGAGAGAACATCACCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2065273 lncRNA upstream 50606 36248134 ~ 36251244 (+) True G1805123
TU2065214 lncRNA upstream 69773 36229748 ~ 36232077 (+) False G1805068
TU2065215 lncRNA upstream 71487 36229748 ~ 36230363 (+) True G1805068
TU2065255 lncRNA upstream 82482 36218801 ~ 36219368 (+) True G1805107
TU2065202 lncRNA upstream 154256 36147020 ~ 36147594 (+) True G1805056
TU2065310 lncRNA downstream 5343 36307550 ~ 36308377 (+) True G1805152
TU2065316 lncRNA downstream 10998 36313205 ~ 36338220 (+) True G1805158
TU2065336 lncRNA downstream 39806 36342013 ~ 36342848 (+) True LOC118943606
TU2065363 lncRNA downstream 73379 36375586 ~ 36375795 (+) True G1805198
TU2065375 lncRNA downstream 113093 36415300 ~ 36425655 (+) True G1805209
XM_021579637.2 mRNA upstream 54016 36243155 ~ 36247834 (+) True LOC110501801
XM_036959175.1 mRNA upstream 241713 35943510 ~ 36060137 (+) False LOC110502095
XM_036959176.1 mRNA upstream 241713 35943510 ~ 36060137 (+) False LOC110502095
XR_002470255.2 mRNA upstream 486938 35783183 ~ 35814912 (+) True LOC110501798
XM_021579634.2 mRNA upstream 521306 35769181 ~ 35780544 (+) False LOC110501797
XR_005038827.1 mRNA downstream 37547 36339754 ~ 36345450 (+) False LOC118943606
XR_005038825.1 mRNA downstream 37550 36339757 ~ 36345450 (+) False LOC118943606
XR_005038828.1 mRNA downstream 38312 36340519 ~ 36345450 (+) False LOC118943606
XR_005038826.1 mRNA downstream 38318 36340525 ~ 36345450 (+) False LOC118943606
XM_021579638.2 mRNA downstream 51463 36353670 ~ 36359762 (+) True LOC110501802
TU2064995 other upstream 426398 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 542424 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3387668 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 3927669 32367636 ~ 32374181 (+) True LOC110501767
TU2058268 other upstream 5004431 31293552 ~ 31297419 (+) True G1798597
TU2065354 other downstream 61389 36363596 ~ 36363930 (+) True G1805191
TU2065389 other downstream 132793 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 1777659 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1996920 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1996920 38299127 ~ 38316253 (+) False G1807306

Expression Profile