RNA id: TU2065406



Basic Information


Item Value
RNA id TU2065406
length 510
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1805234
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36457793 ~ 36458456 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctattttaagaatgtgaaatgtcagaataatagttgagaatgATTggtttatttcagattttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaatgtttcgggtagccttccacaagcttcccacaataagttgagtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacacgctttttcagttctgcccacaaattttctaggattgagttcagggctttgtgatggcccctccaataccttgactttgttgtccttaagccattttgccacaactttggaacaaagcacccccatgtttgatgctgccacccccgtgcttcacggttgggatggtgttctttggcttgctagcctcccccttttcccttcaaacataatgatggtcattatgaccaaacagttctgttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2065403 lncRNA upstream 6341 36451061 ~ 36451452 (+) True G1805231
TU2065375 lncRNA upstream 32138 36415300 ~ 36425655 (+) True G1805209
TU2065363 lncRNA upstream 81998 36375586 ~ 36375795 (+) True G1805198
TU2065336 lncRNA upstream 114945 36342013 ~ 36342848 (+) True LOC118943606
TU2065316 lncRNA upstream 119573 36313205 ~ 36338220 (+) True G1805158
TU2065418 lncRNA downstream 16203 36474659 ~ 36474979 (+) True G1805246
TU2065441 lncRNA downstream 47671 36506127 ~ 36509551 (+) True G1805267
TU2065390 lncRNA downstream 52412 36510868 ~ 36512002 (+) True G1805222
TU2065464 lncRNA downstream 94243 36552699 ~ 36555929 (+) True G1805289
TU2065471 lncRNA downstream 105574 36564030 ~ 36564930 (+) True G1805295
XM_036959204.1 mRNA upstream 51574 36379506 ~ 36406219 (+) False LOC110501803
XM_036959206.1 mRNA upstream 51574 36383737 ~ 36406219 (+) False LOC110501803
XM_036959207.1 mRNA upstream 51574 36383737 ~ 36406219 (+) False LOC110501803
XM_036959205.1 mRNA upstream 51574 36384087 ~ 36406219 (+) True LOC110501803
LOC110502098 mRNA upstream 80957 36362102 ~ 36376836 (+) True LOC110502098
XM_036959223.1 mRNA downstream 380258 36838714 ~ 36917226 (+) True LOC110501807
XM_021579643.2 mRNA downstream 491003 36949459 ~ 36970391 (+) True LOC110501808
XM_021579647.2 mRNA downstream 662479 37120935 ~ 37146250 (+) False LOC110501811
XM_021579646.2 mRNA downstream 662481 37120937 ~ 37146250 (+) True LOC110501811
XM_036959227.1 mRNA downstream 695112 37153568 ~ 37221890 (+) False LOC110501812
TU2065389 other upstream 14716 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 93863 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 582341 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 698367 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3543611 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 1621410 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1840671 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1840671 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 1840671 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 1840671 38299127 ~ 38316253 (+) False G1807306

Expression Profile