RNA id: TU2065441


Basic Information

Item Value
RNA id TU2065441
length 303
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1805267
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36506127 ~ 36509551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACGGTTggcatggtgttcttcggcttgcaagcctccccctttttcctccattatggccaaacagttttatttttgtttcatcagaccagaggacatttctccaaaaaagtacgatctttgtccccatgtgtagttgcaaaccatagtctgttttttttattgcggttttggagcagcggcttcttccttgctgagcggcctttcaggttatgttgatataggactcattttactgtgtatatagatactttgtacatgtttcctccagcatcttcacaaggtcctttgctgttgttctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065418 lncRNA upstream 31148 36474659 ~ 36474979 (+) True G1805246
TU2065406 lncRNA upstream 47671 36457793 ~ 36458456 (+) True G1805234
TU2065403 lncRNA upstream 54675 36451061 ~ 36451452 (+) True G1805231
TU2065375 lncRNA upstream 80472 36415300 ~ 36425655 (+) True G1805209
TU2065363 lncRNA upstream 130332 36375586 ~ 36375795 (+) True G1805198
TU2065390 lncRNA downstream 1317 36510868 ~ 36512002 (+) True G1805222
TU2065464 lncRNA downstream 43148 36552699 ~ 36555929 (+) True G1805289
TU2065471 lncRNA downstream 54479 36564030 ~ 36564930 (+) True G1805295
TU2065491 lncRNA downstream 79332 36588883 ~ 36630226 (+) True G1805312
TU2065533 lncRNA downstream 132992 36642543 ~ 36642910 (+) True G1805352
XM_036959204.1 mRNA upstream 99908 36379506 ~ 36406219 (+) False LOC110501803
XM_036959206.1 mRNA upstream 99908 36383737 ~ 36406219 (+) False LOC110501803
XM_036959207.1 mRNA upstream 99908 36383737 ~ 36406219 (+) False LOC110501803
XM_036959205.1 mRNA upstream 99908 36384087 ~ 36406219 (+) True LOC110501803
LOC110502098 mRNA upstream 129291 36362102 ~ 36376836 (+) True LOC110502098
XM_036959223.1 mRNA downstream 329163 36838714 ~ 36917226 (+) True LOC110501807
XM_021579643.2 mRNA downstream 439908 36949459 ~ 36970391 (+) True LOC110501808
XM_021579647.2 mRNA downstream 611384 37120935 ~ 37146250 (+) False LOC110501811
XM_021579646.2 mRNA downstream 611386 37120937 ~ 37146250 (+) True LOC110501811
XM_036959227.1 mRNA downstream 644017 37153568 ~ 37221890 (+) False LOC110501812
TU2065389 other upstream 63050 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 142197 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 630675 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 746701 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3591945 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 1570315 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1789576 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1789576 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 1789576 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 1789576 38299127 ~ 38316253 (+) False G1807306

Expression Profile