RNA id: TU2065916



Basic Information


Item Value
RNA id TU2065916
length 854
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1805697
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37335977 ~ 37337154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATAActacccatgttacccatgtcCTATTCTGTCCTTGTGAGCTCTGACTGTCTCCTATTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTAGTCCTCTCCATAGTTACATGTTAATATACTCCCTAtagtcctctccatctcctctccatagTTACATGTTAATATACTCCCTATagtcctctccatctcatctccataGTTACATGTTAATATACTCCCTAtagtcctctccatctcctctccatagTTACATGTTAATATACTCCCtatagtcctctctcctctccaaagTTACATGTTAATATACTCCCTATagtcctctccatctcatctccataCTTACATGTTAATATACtagtcctctccatctcctctccatagTTACATGTTAATGTACTAGTCCTCTCCATAGTTACATGTTAATATACTCCccttaatacctgtactaccccTGTAtagccctctccctttcctccataTACTTATAGTCCTCTCCCCTGTACTGTCCCTCAGCAGGCAAAACTGTGTTGTAATTCAGAGTTGTAGTGTTGTTACAGTGTTGAAACCACATCATTTCAAGCAGTTTTGCCTGCTGggtccatccttccctccctaaTCCCCTATCTCTActtgttccctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2065847 lncRNA upstream 97354 37222709 ~ 37238623 (+) True LOC110501814
TU2065726 lncRNA upstream 284665 36999845 ~ 37051312 (+) True G1805533
TU2065686 lncRNA upstream 392628 36942191 ~ 36943349 (+) False G1805500
TU2065687 lncRNA upstream 393262 36942061 ~ 36942715 (+) False G1805500
TU2065688 lncRNA upstream 393262 36942191 ~ 36942715 (+) True G1805500
TU2065923 lncRNA downstream 20996 37358150 ~ 37358976 (+) True G1805703
TU2065947 lncRNA downstream 42521 37379675 ~ 37429633 (+) True G1805725
TU2066024 lncRNA downstream 158562 37495716 ~ 37496295 (+) False G1805796
TU2066025 lncRNA downstream 158562 37495716 ~ 37496295 (+) True G1805796
TU2066042 lncRNA downstream 187765 37524919 ~ 37525133 (+) True G1805813
XM_021579651.2 mRNA upstream 97346 37222661 ~ 37238631 (+) False LOC110501814
XM_036959229.1 mRNA upstream 97346 37222665 ~ 37238631 (+) False LOC110501814
XM_036959227.1 mRNA upstream 114087 37153568 ~ 37221890 (+) False LOC110501812
XM_036959228.1 mRNA upstream 114087 37168797 ~ 37221890 (+) True LOC110501812
XM_021579647.2 mRNA upstream 189727 37120935 ~ 37146250 (+) False LOC110501811
XM_021579660.2 mRNA downstream 427575 37764729 ~ 37783640 (+) False LOC110501820
XM_036959241.1 mRNA downstream 438625 37775779 ~ 37783640 (+) True LOC110501820
XM_021579662.2 mRNA downstream 452203 37789357 ~ 37790416 (+) True LOC110501823
XM_021579664.2 mRNA downstream 456855 37794009 ~ 37794948 (+) True LOC110501825
XM_021579663.2 mRNA downstream 466629 37803783 ~ 37804836 (+) True LOC110501824
TU2065389 other upstream 892900 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 972047 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 1460525 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 1576551 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 4421795 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 742712 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 961973 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 961973 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 961973 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 961973 38299127 ~ 38316253 (+) False G1807306

Expression Profile