RNA id: TCONS_00051628


Basic Information

Item Value
RNA id TCONS_00051628
length 2647
RNA type mRNA
GC content 0.33
exon number 5
gene id XLOC_026493
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32953075 ~ 32958574 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aAAATATAACAGAAACCGATGGCAGGATTCAAAGGTAACTCCTTAAAAAGGATACAATGTATTTATGTAAACATTGTACAGTTATGAGATTGAGTTACTCATTTATCACACTGTACATTAGTTACATTAGccaatttatttactattaagtaataataatatagactTGTGCATAAATTATAAGGCTTAGTTTGTTAATTTCAGTAGTTTCTAACAGAATATTAAAATCcacagttgtgcttgttaacatttgttaatCACTATCAATTAATAAGGACTCACAACGAATTTCATTAACATCaactaagattaataaatgctgtaatagtagtattgtttattgtttgttcatgttatgaatgcattaactaatgaaaccttattgtaaagtgatacTGTTATTAATGCTTCAAATGTTATGTAATTTTACATGTAATTCATCTTTGTCTTTAGTGTGTATCCAAATCAAGAGTATGATATGAGACACGCAAGGCGAGGAATGGCTCTCATCTTTAACCAGAAACAATTCGATTGGAAGCTCGGACTGAAAACCCGCAATGGCACAGATAAAGACAGAGACGACCTTGTTAGCAGATTTCAAGAGCTGAATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATGACGTTTTGTTGAAAATTCAAGAAGCCTCTGCTGCTGATCATGTAGATGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATAAGAAGATCGAAATACCTGAAATTACTGATTTGTTCAAGGGGGATAAATGTCGTAGTCTTGTGGGTAAACCCAAGATCTTCATCTGGCAGGCTTGCCGTGGTGACAAACTGGATGATGCTGTGACTGAAATGAGTGTGGAGGATGTTGAAATGGCTGTAGATGCAGGAGTGCTTTACACCCTTCCAGCAGGAGCAGATTTCATTATGTGTTACTCAACAGCTGAAGgaTTTTGCTCTTTTCGTGAGCCCTTGAATGGCTCATGGTACATTCAGGATCTGTGTGAAATCTTGGGGCGTTATCATTCAGAGCTACAGTTCACTGACATCCTGACGCTTGTTAACATGAAAGTTTCATTGCGCTCTGTACCAAACTGCAGGAATCGCGCTGCTATTGGCAAAAAACAGATGCCTTGCTTTGCGTCCATGCTCACAAAGAGGCTGTTTTTCAGAGACAATACTCAGATCCAATAGTGTTTTTTACTCCATGGCAATTTCAAATTCAGggattttttcattttcttttggtgGGTTTGATTTTGCCAATTAAGATGTGATCCTGGAACgtcatttctgttttaaaatcTTATCCTTACCCTTAAACCTAACTAAATAAGTCCACAAATCTGAGTATTTTGATATGACATAGACTACATATTTTAAGAGgcattaagctttttttttattgtgtaataacATATCTTTTGACCTgttgttatgtttttattgtttttttccagtTTTGTTGTACATTGCACTTGTTTTGTAAAGcctaaaaataaagtgtgatctttTCCTATGTAATGTGATTATTCTGACCTGTTGGAATGTGCATTCCAATAATTCAGTAATATGTTCTACATGTGACCTCTGCTAGTATATGTAAGTTATACATTCCTACATTTagatttctttttacatttatatctatttattacCTCAGCAAATATGAATTAAGAGTGTCATTCTCTTGTTTGACTTATTTGACTTATGAAAAAGTATGTGTGTATTTACTGATTTGTTTTCTTGAAAACCGCacctaaaaataaacagggctttcgtaatacatgtttttaaaggaaaaggTTTGTGCAGCCCTATAGTATAATGGGAAAACTGAACAGTCTTAATCAAAGTACAGTTCACTTTTGAATTTGTAGTGAactgatgtaatgtaatgtattttttatataatgccatgtcagcaaccaaggctatcttcatggcaggaatctttcaacaataaatatacaattaaaaaaaaataaaaataaaacattaataaataagatttttttaatacatttaatcatgataaaaattctaaaatcttttctggtttcactttttcaaaaatgtccttaaaagagttaatttcataaaaagtccttctggaatcagtaaaagcaggacagtccagtaaaatatgttttacagtaagaggagttttgcagcacaaactaGTTTTTCAaagtagggttttcaccttggagcaaaaaaccatgtgttattcttgtatgcccaatacgacatctggtaaaaactacttgatcaaatcgattcttaaaatgcCTTAAAATTCGTAATCCTTGATGATGTACTGTATTGAGGATCTCAATACAGTACATCATCTGTATTGAGGATCTGTTTATACGAGTTTCTGGCAGAATCATAAATTATACTCCCATAATCCAAACGGGATCGAATGAGAACTCGATAAAGACGCAAAAGTACAGTTAAATCTGCTCCCCATTTAGTTTTTGCCAACACTTTGCTTATGTTCATTGCTTTCAAGCACTTGTTTTTTAACAACTTCATATGAGggataaaagtcattttgttgtCAAAAAGAAGACCTAAAAACTTGATTTCTTTAACTACTTTGATTGGAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-48 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000183902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051626 lncRNA downstream 27578 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00053063 lncRNA downstream 93728 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051608 lncRNA downstream 349884 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 381023 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00053062 lncRNA downstream 381216 32565194 ~ 32571859 (-) False XLOC_026481
TCONS_00051645 lncRNA upstream 127180 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 127180 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 343386 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051647 lncRNA upstream 343610 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00051648 lncRNA upstream 387268 33344076 ~ 33345247 (-) True XLOC_026500
TCONS_00051625 mRNA downstream 18716 32924186 ~ 32934359 (-) False XLOC_026492
TCONS_00051624 mRNA downstream 25559 32924185 ~ 32927516 (-) False XLOC_026492
TCONS_00051627 mRNA downstream 27599 32924611 ~ 32925476 (-) True XLOC_026492
TCONS_00051623 mRNA downstream 40288 32906082 ~ 32912787 (-) True XLOC_026491
TCONS_00051621 mRNA downstream 50805 32898709 ~ 32902270 (-) False XLOC_026490
TCONS_00051632 mRNA upstream 4680 32961488 ~ 32965848 (-) True XLOC_026494
TCONS_00051633 mRNA upstream 12396 32969204 ~ 32973554 (-) False XLOC_026495
TCONS_00051634 mRNA upstream 12959 32969767 ~ 32973511 (-) False XLOC_026495
TCONS_00051636 mRNA upstream 21053 32977861 ~ 32981430 (-) True XLOC_026496
TCONS_00051637 mRNA upstream 23161 32979969 ~ 33030727 (-) False XLOC_026497
TCONS_00051585 other downstream 765690 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2152417 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2464981 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3082951 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 3084343 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051635 other upstream 16166 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 467384 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 991861 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1066357 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1078384 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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