RNA id: TCONS_00051633


Basic Information

Item Value
RNA id TCONS_00051633
length 1342
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_026495
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32969204 ~ 32973554 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACTGCGTTGTTGATTAGTTTGTCATTAAACGTTCATAAATTCCACAGAATgcaccacaacaaatcaataaTGATGGCAACTGAAACCACGAGCAATGAATCAGTGTGTATCCAAATCAAGAGTATGATATGAAGCACGCGAAGCGAGGATTGGCTCTCATCTTTAACCAGAAAGATTTCAGTCTGCTCGGACTGAAAACCCGCAAAGGCACAGATAAAGACAGAGACAGCCTTGTTAGCAGatttgAAGAGCTGGATTTTGAGGTGAAGGCTTATAATGATTATAGTCGGGATAAAGTTTTGAAGGAAATTAAAGAAGTCGCTGCTGCTGATCATGTAGACGCAGACTGTTTCGTCTGCATCTTTTTAAGTCATGGGGAAGATGGCCATGTTTATGCCAATGATGAGAAGATCAAAATACCGGAAATCACTGATTTGTTCAAGGGGGATAAATGTCGTGGTCTTGTGGGAAAACCCAAGATCTTTATCTGGCAGGCTTGCCGTGGTGACAAAAAGGATGATCCTGTGGCTCCAATGAGTGCGGAGGACAGTGATGATGAAATGGCTGTAGATGCAGGAGTGTCTAACACCCTTCCAGCAGGAGCAGATTTCATTATGTGCTACTCAACAACTGAAGgatTTTGCTCTTTCCGTGATCCCTTGAATGGCACATGGTACATTCAGGATCTGTGTGAAATCATGGGGCGTTATCGTTCACAACTGGAGTTCACCAACATCCTGACGCTTGTTAACAGAAAAGTTTCATTGCGCTCTATATGCGATGATCTTTCTGCTACTGGCACAAAGCAGATGCCTTGCTTTGCATCCATGCTCACCAAGAGGCTGTTTTTCAGGCCTAAGAAgtaatattactgttttactCTATGACAATTTCAAATTGCGGGATTATATCATTTTCTTTTGGTGGGTGTGAATCTGCCAAGTAAGAAattatcctggaccatcatttcATTATGAAAATCTAATCCATACCTAATCCCTACCCTTAACTTTAAATAATTCCCCAAATCTGAAAGGATTAATATTGGATGACAATGATGTAGATGCACataaccataactgtaaattaagcTTAACATAAACTTTAAATCTATCCCTTAAGTCTGACTGGCCAATTTTAGTGTTGTTCAGGAGCAAATTTGAGTTGGTTTCATTTTTATCTTATTACTGATTGGACCAGTCCTTTGATTTTGTGTTTTATCCAACGCATCACAATGACACTTGTTGTCTGAAGAATGAATGTATTTTGATATGACTTCAGACACTATTTGACAAAGAACAAAATTActgtttaataaagcaaatacTAAACAAAACAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-12 Predicted to enable cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in apoptotic process. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CASP6 (caspase 6).

Ensembl:

ensembl_id ENSDART00000103182

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051626 lncRNA downstream 43707 32924539 ~ 32925497 (-) False XLOC_026492
TCONS_00053063 lncRNA downstream 109857 32855161 ~ 32859347 (-) True XLOC_026488
TCONS_00051608 lncRNA downstream 366013 32598644 ~ 32603191 (-) True XLOC_026483
TCONS_00051605 lncRNA downstream 397152 32565194 ~ 32572052 (-) False XLOC_026481
TCONS_00051645 lncRNA upstream 110434 33083988 ~ 33113683 (-) False XLOC_026498
TCONS_00051646 lncRNA upstream 110434 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00053064 lncRNA upstream 326640 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051647 lncRNA upstream 326864 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00051648 lncRNA upstream 370522 33344076 ~ 33345247 (-) True XLOC_026500
TCONS_00051632 mRNA downstream 3356 32961488 ~ 32965848 (-) True XLOC_026494
TCONS_00051629 mRNA downstream 10630 32954169 ~ 32958574 (-) False XLOC_026493
TCONS_00051630 mRNA downstream 10699 32954575 ~ 32958505 (-) False XLOC_026493
TCONS_00051631 mRNA downstream 11502 32954875 ~ 32957702 (-) True XLOC_026493
TCONS_00051628 mRNA downstream 12396 32953075 ~ 32956808 (-) False XLOC_026493
TCONS_00051636 mRNA upstream 4307 32977861 ~ 32981430 (-) True XLOC_026496
TCONS_00051637 mRNA upstream 6415 32979969 ~ 33030727 (-) False XLOC_026497
TCONS_00051638 mRNA upstream 19487 32993041 ~ 33009111 (-) False XLOC_026497
TCONS_00051639 mRNA upstream 19893 32993447 ~ 33030727 (-) False XLOC_026497
TCONS_00051640 mRNA upstream 30899 33004453 ~ 33029938 (-) False XLOC_026497
TCONS_00051585 other downstream 781819 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2168546 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2481110 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3099080 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 3100472 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051656 other upstream 450638 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 975115 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1049611 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1061638 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 1063927 34037481 ~ 34037881 (-) True XLOC_026535

Expression Profile

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