RNA id: TU2070154


Basic Information

Item Value
RNA id TU2070154
length 471
lncRNA type read_through
GC content 0.44
exon number 2
gene id G1809401
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40176636 ~ 40205483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatgcaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069895 lncRNA upstream 92669 40080106 ~ 40083967 (+) True G1809159
TU2069911 lncRNA upstream 138040 40038236 ~ 40038596 (+) True G1809175
TU2069910 lncRNA upstream 138908 40037423 ~ 40037728 (+) True G1809174
TU2069909 lncRNA upstream 139332 40037028 ~ 40037304 (+) True G1809173
TU2069905 lncRNA upstream 145693 40030740 ~ 40030943 (+) True G1809169
TU2070206 lncRNA downstream 19509 40224992 ~ 40226173 (+) True LOC110502148
TU2070209 lncRNA downstream 20995 40226478 ~ 40226683 (+) True G1809450
TU2070230 lncRNA downstream 43756 40249239 ~ 40249526 (+) True G1809469
TU2070260 lncRNA downstream 61513 40266996 ~ 40267411 (+) True G1809499
TU2070265 lncRNA downstream 64707 40270190 ~ 40270565 (+) True G1809504
LOC118943662 mRNA upstream 263596 39912913 ~ 39913040 (+) True LOC118943662
XM_021579712.2 mRNA upstream 263774 39890643 ~ 39912862 (+) False si:ch73-116o1.2
XM_036959289.1 mRNA upstream 610012 39478260 ~ 39566624 (+) False LOC110501860
LOC110502148 mRNA downstream 10537 40216020 ~ 40263466 (+) False LOC110502148
XM_036959308.1 mRNA downstream 152464 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 153049 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 174499 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 174499 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 251241 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 481768 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1025303 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1313500 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1765473 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 984206 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1258995 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 2051072 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2123790 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2166823 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile