RNA id: TU2070260


Basic Information

Item Value
RNA id TU2070260
length 416
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1809499
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40266996 ~ 40267411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcaatactgccccccagccataagaaattaacaagtccaatacaacaaatgaaagataaacctcttgttaatctacccatcatgtctgatttaaaaatgctttacagctaaagcacaacatatgattttgttagatcaccgccaagtaaaaaaaacacagccatttttccagccaatgatagaagtcacaaaaagcagaaatatagataaaatgaatcactaacctttgatgatcttcatcagatgacactcataggacatcatgttacacaatacatgtatgttttgttcgataatgtgcatatttatatccaaaaatctcagtttaaattggcgcgttacgtgcagtaatgttttgattccaaaacatccggtgattttgcagaaatactcataataaacattgataaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070230 lncRNA upstream 17470 40249239 ~ 40249526 (+) True G1809469
TU2070209 lncRNA upstream 40313 40226478 ~ 40226683 (+) True G1809450
TU2070206 lncRNA upstream 40823 40224992 ~ 40226173 (+) True LOC110502148
TU2070154 lncRNA upstream 61513 40176636 ~ 40205483 (+) True G1809401
TU2069895 lncRNA upstream 183029 40080106 ~ 40083967 (+) True G1809159
TU2070265 lncRNA downstream 2779 40270190 ~ 40270565 (+) True G1809504
TU2070275 lncRNA downstream 9891 40277302 ~ 40277852 (+) True G1809514
TU2070277 lncRNA downstream 11589 40279000 ~ 40279369 (+) True G1809516
TU2070305 lncRNA downstream 27073 40294484 ~ 40294757 (+) True G1809544
TU2070363 lncRNA downstream 68130 40335541 ~ 40428461 (+) True G1809582
LOC110502148 mRNA upstream 3530 40216020 ~ 40263466 (+) False LOC110502148
XM_021579717.2 mRNA upstream 66558 40190584 ~ 40200438 (+) True LOC110501869
XM_021579718.2 mRNA upstream 68904 40190583 ~ 40198092 (+) False LOC110501869
XR_005038836.1 mRNA upstream 69841 40190583 ~ 40197155 (+) False LOC110501869
XM_021579716.2 mRNA upstream 81536 40171735 ~ 40185460 (+) True acmsd
XM_036959308.1 mRNA downstream 90536 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 91121 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 112571 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 112571 40379982 ~ 40418247 (+) False LOC110501870
XM_036959310.1 mRNA downstream 112571 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 341601 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 572128 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1115663 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1403860 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1855833 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 922278 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1197067 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 1989144 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2061862 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2104895 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile