RNA id: TU2070305


Basic Information

Item Value
RNA id TU2070305
length 274
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1809544
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40294484 ~ 40294757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagaaattgagaaacctatccaaccaaaaacatagaaaacctgagcctacgccttcactatggtgaatcactaaaacaatacagaaatagtGTACTGTGGAAAAAGACGGAACAGcgcatcagaaatcagctcaatgtaattgaagaatccatagaacctaaccacttctggggaaattggaaaactctaaacaagcaacaacacaaagagttatctatccaaaacagagatgtatggataaaccacttctccaatctttttggctctataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070277 lncRNA upstream 15115 40279000 ~ 40279369 (+) True G1809516
TU2070275 lncRNA upstream 16632 40277302 ~ 40277852 (+) True G1809514
TU2070265 lncRNA upstream 23919 40270190 ~ 40270565 (+) True G1809504
TU2070260 lncRNA upstream 27073 40266996 ~ 40267411 (+) True G1809499
TU2070230 lncRNA upstream 44958 40249239 ~ 40249526 (+) True G1809469
TU2070363 lncRNA downstream 40784 40335541 ~ 40428461 (+) True G1809582
TU2070582 lncRNA downstream 221797 40516554 ~ 40516781 (+) True G1809774
TU2070589 lncRNA downstream 228422 40523179 ~ 40523423 (+) True G1809781
TU2070592 lncRNA downstream 229550 40524307 ~ 40524652 (+) True G1809784
TU2070594 lncRNA downstream 231008 40525765 ~ 40526163 (+) True G1809786
LOC110502148 mRNA upstream 31018 40216020 ~ 40263466 (+) False LOC110502148
XM_021579717.2 mRNA upstream 94046 40190584 ~ 40200438 (+) True LOC110501869
XM_021579718.2 mRNA upstream 96392 40190583 ~ 40198092 (+) False LOC110501869
XR_005038836.1 mRNA upstream 97329 40190583 ~ 40197155 (+) False LOC110501869
XM_021579716.2 mRNA upstream 109024 40171735 ~ 40185460 (+) True acmsd
XM_036959308.1 mRNA downstream 63190 40357947 ~ 40418247 (+) False LOC110501870
XM_036959307.1 mRNA downstream 63775 40358532 ~ 40418247 (+) False LOC110501870
XM_036959316.1 mRNA downstream 85225 40379982 ~ 40416827 (+) False LOC110501870
XM_036959306.1 mRNA downstream 85225 40379982 ~ 40418247 (+) False LOC110501870
XM_036959310.1 mRNA downstream 85225 40379982 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 369089 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 599616 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1143151 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1431348 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1883321 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 894932 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1169721 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 1961798 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2034516 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2077549 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile