RNA id: TU2071259


Basic Information

Item Value
RNA id TU2071259
length 266
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1810401
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41001310 ~ 41014470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgactacctcatgaagttggttgagagaatgtcttcactattattctacaatgtataaaatagtacaaataaagaaaaacccctgaatgagtaggtgtgtccaaacttttgcctggtactgtatataaaggcTCCCAGAAGGTAATGTAGACTCCTAGTTCCAGACCAGGAACTCTAGGCCCATTGCTTTACCTCAAGTTAAACAATCAACCCACCTATTTCAAAGGGGTTATTGTAGCACCTGAACTTGAATATCCTTTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071235 lncRNA downstream 5441 40992919 ~ 40995869 (-) True LOC110501883
TU2071240 lncRNA downstream 53383 40942407 ~ 40947927 (-) True LOC110501882
TU2071179 lncRNA downstream 72074 40888770 ~ 40929236 (-) True LOC110502149
TU2071211 lncRNA downstream 112651 40888345 ~ 40888659 (-) True G1810361
TU2071201 lncRNA downstream 133763 40867332 ~ 40867547 (-) True G1810351
TU2071345 lncRNA upstream 109092 41123562 ~ 41123869 (-) True G1810480
TU2071356 lncRNA upstream 118632 41133102 ~ 41133392 (-) True G1810491
TU2071368 lncRNA upstream 126218 41140688 ~ 41141172 (-) True G1810503
TU2071398 lncRNA upstream 153802 41168272 ~ 41168475 (-) True G1810533
TU2071417 lncRNA upstream 173506 41187976 ~ 41188573 (-) True G1810552
XR_002470265.2 mRNA downstream 13099 40942404 ~ 40988211 (-) False LOC110501882
XR_002470267.2 mRNA downstream 13099 40945385 ~ 40988211 (-) False LOC110501882
XR_002470266.2 mRNA downstream 13100 40942404 ~ 40988210 (-) False LOC110501882
XM_021579734.2 mRNA downstream 13101 40942404 ~ 40988209 (-) False LOC110501882
XM_036959333.1 mRNA downstream 59330 40930259 ~ 40941980 (-) True LOC110501881
XR_005038969.1 mRNA upstream 425478 41439948 ~ 41447272 (-) True LOC118943638
XM_021579740.2 mRNA upstream 433429 41447899 ~ 41522899 (-) False LOC110501886
XM_021579738.2 mRNA upstream 433429 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA upstream 433429 41447899 ~ 41523764 (-) False LOC110501886
LOC110502151 mRNA upstream 598092 41612562 ~ 41613136 (-) True LOC110502151
TU2070925 other downstream 187923 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2056780 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 2056780 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2389023 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2788123 38208790 ~ 38213187 (-) False G1807731
TU2071828 other upstream 433429 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 590504 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1372352 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1590233 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1662787 42677257 ~ 42677760 (-) True G1812404

Expression Profile