RNA id: TCONS_00051652


Basic Information

Item Value
RNA id TCONS_00051652
length 2291
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_026503
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33420214 ~ 33422738 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTTGTGGAGGCGTGAGCTAGAGAGTTAGCGTTACTGGTCAGCTAAACGAAGACGCTGACGACTTTCTGAATTTAGAGGTAAAACAGTTTTCATACTCCTTCAAGAAGTAAATTGGGTGGCTCTTTGTGGTCATATTTGTCGATAAACAAAGCAGGAATGGAGAACTCTGATGTGATAAATTTCAGTTGTCTTGAAAAAGAGCTACACTCGGCGCTGCAAGCGGACAGAAAATACCAGAGGGAAAATGATGCCAAGTTTCGTGCTCTGAACCAAAAGGTCGCCAGCTACGAAGAATTCAGaGACATTGTTCTCGCATCTCATTTGAAACCACTTGATCGAAACGACATCTCTGGTTCACCCCGAAAGCAGCCATGGAATCCAGTTGCTTGTAGGACAAATTATGTATGTGCTTCTTCTGAGCAGGTCCAGCCACAATTATCTGAGGTCCAGCCAAGAAGTGCATCAGAGTTCATCCGTGACTGGCGCAGGTTTGCAGGATGCTCATTTGAAAAGTACAGTCTCCTTGTAAGTCTGGGAGGAGAGGCGCTACAAAAAATCTTCAGCACAGAGATTGGCCTCGGTCTTCTGGGAGAGTTCCTACTGATTCTGTCTCAGTGTCTAAAGTCAGGGGATGAGGACAGAGTGACTGGAGTGCTGGACGGCCTTTCCAAAACAGGCCGCTTTTCCATTAACCTGTCTCTTCTTAGTCAGGCGGAACAAGAAGCCTGCGAGGAGCTTTTCAACAAGCTAAAAGTTGCAGCCGGCGAATGTCATCCATATAAAGATAATTCAAACACTTCAGTTGTTTGTGAGGCAGGTCTGACACACATGGAGGATAACAAGACTGACATTACAACAACACTTAAAGAATTAGCAGGAAAATATGGCACTGAAAAATAGTTTATACTAAAACAAATCTATTAGTTTCTTCAGTTTCATATTctctttgttgtttgttgttgttagttTTCAGGCAAAATATGTTAAAAGTGCAAGTCCTTTACTTTTGGTCCATCTGCCCATTGTTACTTTTAGCTTATGAAGCCCCTCAGGATAAAGAGGACATCTTTGCGAGGAAGGCCTGTCCTGCATTTCTTGTCTTTGACACTGTGGCCTTCCTTTCTGACATGACCGTCAATCTTTCTTGTCGCTGCAAACCAGAGGAGATGCATTCAGTGGTGTGGTACTATCAAAAACACATCGGCTCCATGAACACCAAAGTCCTCACAGACTATGCAGGAACTGCAGTGGTGGAATCCTCCAAGGTTGGCAGAGGGTCAGATCTGCGTAGTCGCTTTTCCATCCGCTTGTTTAGCCTTCTCATCTTCAGGGTTCAGAAAGCTGACTCGGGCCACTATATCTGTGGcacggcctctggtgaattcttCTACGGCTACGATGTTGACGTCCAGGTGGTCCGACACGTTTTATTTCCCTGGAACCTCAATCGGAGAACTCAAGCAGAGGATGCAGAGATGTTTCAGGTGTTCACTCGGCACCAGTCATGGTCTAAATGTGACCGTTGTGACATCCAGGGTGAGCAGACCCGTGTAGGATTTTGTTTTGTCAAAAGCATCTACCTTCAGGTACGTTATCAGAGTGATTCAGAGACAGAGGCTCCCTGCGGTTCCCCAGCTGTTCCTTTACAATTTGGCATTTCAGGCAGCAGCTACGGAGCTGAGCTTGAGGTGAGGGACTGTCATGCCACCTGTCCTCCAAAACCTAAAGTATCTCCAGAGAGACAAGCTCTAATGAAGTTCCTTGAGATTGAAGATCAAGCTTCTTCAGGGGTTTCCATCCACTTCTACAACCACCCCACAGACTCTGATCTGGTCCTGATTTGTCCTGGTGCCAAACCGCAGTATGCAGTGGCCTGGGATAAAGGCTCAAAGCCGCTTTATCTATCTCAGTATATGGAGGGGCTGAATAGGACGTCTCGGGTCTTCATTGACAGCGGTCACCATCTACACTTCACGCCTGTGCAGCTGGAAGATAAAGGCTCCTATTTCTGTTGGATCCAAGGAGAACTGGCTGCAGAGATCAGATTAGGGGTGTATCTGCGTTTGGGACGTTTGCGACAGATCTTCGACCCAGAGTCCATCTATGCTCTACGACTTATTTTCATTTGCTACATTGGCATTACTGCTGTGTTTATCCTCACAGTGTTTGTCAGatttatttttcagataaacaagacaGACACATCTGCTGACATTGACTGAATTTGAATGTGCTGTAGTTTGATTTGTGATGTCAAACAATTAAAcgctttttttactttatataa

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0030030 cell projection organization biological_process
GO:0001947 heart looping biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0036157 outer dynein arm cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040718-253 Acts upstream of or within axonemal dynein complex assembly; cerebrospinal fluid circulation; and embryonic heart tube morphogenesis. Located in axoneme. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; otic placode; peripheral olfactory organ; and spinal cord neural tube. Used to study primary ciliary dyskinesia. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 17. Orthologous to human CCDC103 (coiled-coil domain containing 103).

Ensembl:

ensembl_id ENSDART00000075493

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051651 lncRNA downstream 21677 33396705 ~ 33398537 (-) True XLOC_026502
TCONS_00051648 lncRNA downstream 74967 33344076 ~ 33345247 (-) True XLOC_026500
TCONS_00051647 lncRNA downstream 116091 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00053064 lncRNA downstream 118903 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051646 lncRNA downstream 160593 33083988 ~ 33259621 (-) True XLOC_026498
TCONS_00051655 lncRNA upstream 1286 33424024 ~ 33426932 (-) False XLOC_026504
TCONS_00051657 lncRNA upstream 2807 33425545 ~ 33427584 (-) True XLOC_026504
TCONS_00051659 lncRNA upstream 13016 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051667 lncRNA upstream 258780 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00053065 lncRNA upstream 495828 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051650 mRNA downstream 2388 33395942 ~ 33417826 (-) False XLOC_026502
TCONS_00051649 mRNA downstream 24981 33389023 ~ 33395233 (-) True XLOC_026501
TCONS_00051643 mRNA downstream 244631 33065613 ~ 33175583 (-) False XLOC_026498
TCONS_00051644 mRNA downstream 306335 33066004 ~ 33113879 (-) False XLOC_026498
TCONS_00051641 mRNA downstream 388415 33005024 ~ 33031799 (-) False XLOC_026497
TCONS_00051654 mRNA upstream 1248 33423986 ~ 33427803 (-) False XLOC_026504
TCONS_00051658 mRNA upstream 9453 33432191 ~ 33437796 (-) False XLOC_026506
TCONS_00051660 mRNA upstream 38337 33461075 ~ 33494163 (-) False XLOC_026507
TCONS_00051661 mRNA upstream 43167 33465905 ~ 33469722 (-) True XLOC_026507
TCONS_00051664 mRNA upstream 147845 33570583 ~ 33573252 (-) False XLOC_026508
TCONS_00051635 other downstream 446680 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1232829 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2619556 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2932120 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3550090 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051656 other upstream 1454 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 525931 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 600427 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 612454 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 614743 34037481 ~ 34037881 (-) True XLOC_026535

Expression Profile

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