RNA id: TCONS_00051655


Basic Information

Item Value
RNA id TCONS_00051655
length 726
lncRNA type retained_intron
GC content 0.43
exon number 4
gene id XLOC_026504
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33423986 ~ 33427803 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAGTTCAAAGCTTGTGTCGTTTAATTTATCAAGTTGACAAGTCTAGGCAGAATAAGTTGTCTTCATTCGTTTTCATTTAACTTACACTTTAACTTATAGTTACTGGTGTTGAcattttcaatagtttttttttcccaatgttttatttcataattggaagtgaatgaatgaattgttgctCCTTTGGCGAGTTTTTGTTTTAGATATGCTAGGTGTTTTGATAGATTTATGGAGTCAGGTTAATTTAGCCAGTGTGCTACTCATGTATTATCTAAAATTTAAACCTAGTCTATATTTTGGTggttttgctgtttttgtgtattttattaattttggtcCTCCTGTTTAGGACGTGGTGGGTCATCGGGAGCCAAGTTCCGCATCTCACTGGGTCTCCCAGTGGGAGCGGTCATCAACTGCGCTGACAACACAGGTGCAAAGAACCTGTACATCATTTCCGTCAAAGGCATCAAGGGTCGTCTGAACAGGCTGCCTTCCGCCGGTGTGGGTGACATGGTTATGCATCCTGCGGTGGTCATACGACAGCGGAAGTCGTATCGGCGAAAAGATGGCGTGTTTCTATACTTTGAAGACAATGCTGGGGTCATAGTGAATAACAAAGGAGAAATGAAAGGCTCCGCCATCACAGGACCTGTAGCCAAGGAATGCGCAGACCTGTGGCCCAGGATTGCTTCTAATGCTGGCAGCATTGCCTGAGCACAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-8756 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

Ensembl:

ensembl_id ENSDART00000139146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051653 lncRNA downstream 1290 33420219 ~ 33422734 (-) True XLOC_026503
TCONS_00051651 lncRNA downstream 25487 33396705 ~ 33398537 (-) True XLOC_026502
TCONS_00051648 lncRNA downstream 78777 33344076 ~ 33345247 (-) True XLOC_026500
TCONS_00051647 lncRNA downstream 119901 33300418 ~ 33304123 (-) True XLOC_026499
TCONS_00053064 lncRNA downstream 122713 33300194 ~ 33301311 (-) False XLOC_026499
TCONS_00051659 lncRNA upstream 8822 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051667 lncRNA upstream 254586 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00053065 lncRNA upstream 491634 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051675 lncRNA upstream 495688 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00051677 lncRNA upstream 509521 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00051652 mRNA downstream 1286 33420214 ~ 33422738 (-) False XLOC_026503
TCONS_00051650 mRNA downstream 6198 33395942 ~ 33417826 (-) False XLOC_026502
TCONS_00051649 mRNA downstream 28791 33389023 ~ 33395233 (-) True XLOC_026501
TCONS_00051643 mRNA downstream 248441 33065613 ~ 33175583 (-) False XLOC_026498
TCONS_00051644 mRNA downstream 310145 33066004 ~ 33113879 (-) False XLOC_026498
TCONS_00051658 mRNA upstream 5259 33432191 ~ 33437796 (-) False XLOC_026506
TCONS_00051660 mRNA upstream 34143 33461075 ~ 33494163 (-) False XLOC_026507
TCONS_00051661 mRNA upstream 38973 33465905 ~ 33469722 (-) True XLOC_026507
TCONS_00051664 mRNA upstream 143651 33570583 ~ 33573252 (-) False XLOC_026508
TCONS_00051665 mRNA upstream 143651 33570583 ~ 33573252 (-) False XLOC_026508
TCONS_00051635 other downstream 450490 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1236639 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2623366 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 2935930 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 3553900 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051678 other upstream 521737 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 596233 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 608260 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 610549 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051715 other upstream 620247 34047179 ~ 34047616 (-) True XLOC_026538

Expression Profile

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