RNA id: TU2072652


Basic Information

Item Value
RNA id TU2072652
length 200
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1811709
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42132070 ~ 42132269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacatagacaatcacccacaacccacaatgacaaaacaggctacctaaatatggttcccaatcagagacaacgactaacacctgcctctgattgagaaccatatcaggccaaacacagaaacagacaaactagacatccaacataaaatgcccacccagctcacgtcctaaccatcactaaaacaaggaaaacacaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072639 lncRNA upstream 11195 42120454 ~ 42120875 (+) True G1811696
TU2072472 lncRNA upstream 141439 41990028 ~ 41990631 (+) True G1811532
TU2072453 lncRNA upstream 161796 41967306 ~ 41970274 (+) True G1811516
TU2072258 lncRNA upstream 267496 41863711 ~ 41864574 (+) False G1811331
TU2072660 lncRNA downstream 4316 42136585 ~ 42136947 (+) True G1811717
TU2072692 lncRNA downstream 24353 42156622 ~ 42156967 (+) True G1811749
TU2072823 lncRNA downstream 109813 42242082 ~ 42242419 (+) True G1811873
TU2073085 lncRNA downstream 308350 42440619 ~ 42440843 (+) True G1812123
TU2073088 lncRNA downstream 313198 42445467 ~ 42445698 (+) True G1812126
XM_021579999.2 mRNA upstream 188845 41941197 ~ 41943225 (+) False LOC110502132
XM_021580000.2 mRNA upstream 188845 41941206 ~ 41943225 (+) True LOC110502132
LOC110502150 mRNA upstream 603934 41526982 ~ 41528136 (+) True LOC110502150
XM_036959338.1 mRNA upstream 768944 41286486 ~ 41363126 (+) False LOC110501885
XM_021579744.2 mRNA downstream 124148 42256417 ~ 42389468 (+) False LOC110501889
XM_021579751.2 mRNA downstream 379704 42511973 ~ 42550970 (+) False LOC110501894
XM_021579752.2 mRNA downstream 379705 42511974 ~ 42550970 (+) True LOC110501894
XM_036959347.1 mRNA downstream 482909 42615178 ~ 42685108 (+) False LOC110502156
XM_036959345.1 mRNA downstream 482912 42615181 ~ 42685108 (+) False LOC110502156
TU2071621 other upstream 665721 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 939578 41189689 ~ 41192492 (+) True G1810553
TU2069833 other upstream 2206675 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 2437202 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 2980737 39149080 ~ 39151333 (+) True G1808209
TU2072842 other downstream 124286 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 197004 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 240037 42372306 ~ 42389287 (+) True LOC110501889
TU2073435 other downstream 591403 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 597332 42729601 ~ 42735867 (+) True LOC110502157

Expression Profile