RNA id: TU2073337


Basic Information

Item Value
RNA id TU2073337
length 1768
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1812346
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42589367 ~ 42591134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTCTTTTCACAGATTGACTTTAAGAGCCTGATTGCTATTAATTTACCACCAGCTGACTTCAGCATTTACtcccacctatctctctctcacacacacacacacacacacacacacacacacacacacacacccagcagtATTTACACACCTTCACCACTGTAACTCAGTGCAGACAGACGACAGGGGGCTGTTACTCTctaacagagaggagcagagccgTAGGCTGGGGCAATTCCACACTGTCCTCTACCAAAGTGTTAATTGAAAAGACGACATTAAGAATGTTAAAGGAGCCCTTGTTGACCTCACCTTAAAAGTGTCACTGTAATCTGTTAGTGAAGCTCTGCTGCTCTTTCCTGTGCAAATGGTTCTAGCAGGTGAAACCTTTCAATGAACAAATGCCTCCCTCCCCTGAGTCCATTTTCACATGGGCCACTTTGAAATCAATCGACAGTAGGCTAGTGATTTTCACAGCTCATGAGAGAAGCAAGAGTTTGGTAATTGCCATTATAAAATGAGTCTCATGACTTGTTATAGGATGTCACGGTCACAGTTGAAATCCGTTTTTACAGAACTCTCTTATGGCGGCTCAGACGGATCATTTTACAAAGCTAGACACCAACCATGTGGCAAGAATTGGAAAACACATTCAAAAGGGCAACTGGAGGACGAAGAGTAAGCTGCATCATGACGATAAAAAATAAGTTAAACTTCTAGAAGGTTGTGGCCTACTTCTTCAGTACATTTTATCTGGGGCTATATAAACCATTCAgctgaaaatgtatttaattaagTCCAACTCTGAAAACTGAGCAGCACAGTTCATGTGGTAGTTCAGTTTGATCGTTTCGCCATATGATGCCATCTTCGGCCAGTCTGGACTCTGGAGTCAGTTTTTGGTCCCACTGGCTCGGTTGTCTAAGCCTGAACACACTGACCAAATCTGTAGAAATCGCTCTGGCTCTGCGAGAGAAGCAGTGAAAATGTATCTTTATTTTGTCAGCTGGAGGAGCTAGCGTCTCATAGTAACTCATCAACTCCTGATTTGCCAGTACTGATACAGTACTGTGAGACAAGGGGAAGTTTCCAATTACGCACATCCTGCTGATAGATCCCAACAGCATTCTTGGGTCTTGGACTTCATATGATACTTTCTCCCAATTGAATTAGTGTAATCGGCAGTTTGAATCAAAGAAACCAACGTTTCTTGGTCCAATGCTAAAATGCTGTCTGGTTTCAATGGTTTCTATTTCAAAGTTTTCTTATGTCAGTAATTTCTTTGGATTTGTGAAACATGGAACtgcatttttcatttttttctcgtCTTTTCAATTTCTTTGTCAGTTGACTGCGAGGGAGATTTAGGATTATGAAGCACAAACCAGATTAGGTGCCGTGGCCTCAGTCGAGATGGTTTGCAGTTGCACTGTAGGAGAGGAGGCTCAGTTTCAAAAGGGGGCACTGTTGTGCCACTGCAACAGTACATTTTCTGTCTTTGATATGCATACTGTGGTGTGTCGTTTTGAGTCTCCGTGCTTTTGTCCTGGGTGCAGTTGATGTCAAGAAGCTTCTATTATGACATCAGCATTTTAAGAATATACATTTTTAATGTCCTCAGAGGGACTTATCCAGCAGTTGTTGTTGGAGGTTCTTTAGTCTTTGATTTGAGAGAATATTCAGGATGCTAATATATGATATACATACTAATATGCCTGCTGCCAGTAAAATAGGCTATAATAGCAGAGGTATATGATATTATCAGAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073335 lncRNA downstream 812 42588303 ~ 42588555 (-) True G1812344
TU2073331 lncRNA downstream 5931 42583067 ~ 42583436 (-) True G1812340
TU2073325 lncRNA downstream 17512 42568217 ~ 42571855 (-) True G1812334
TU2073256 lncRNA downstream 108905 42480247 ~ 42480462 (-) True G1812279
TU2073253 lncRNA downstream 112698 42476287 ~ 42476669 (-) True G1812276
TU2073345 lncRNA upstream 13569 42604703 ~ 42604938 (-) False LOC110502155
TU2073353 lncRNA upstream 16457 42607591 ~ 42608500 (-) True G1812352
TU2073401 lncRNA upstream 70444 42661578 ~ 42661930 (-) True G1812395
TU2073513 lncRNA upstream 97076 42688210 ~ 42688979 (-) True G1812491
TU2073542 lncRNA upstream 105088 42696222 ~ 42696512 (-) True G1812495
XM_036959343.1 mRNA downstream 689627 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 822189 41764963 ~ 41767178 (-) True LOC110502131
XM_021579742.2 mRNA downstream 845543 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA downstream 845543 41702596 ~ 41743824 (-) True LOC110501888
XM_021579741.2 mRNA downstream 964571 41622821 ~ 41624796 (-) True LOC110501887
XM_021579753.2 mRNA upstream 1084 42592218 ~ 42603449 (-) True LOC110501896
LOC110502155 mRNA upstream 12864 42603998 ~ 42605768 (-) False LOC110502155
XM_021579754.2 mRNA upstream 149485 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 150124 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 150124 42741258 ~ 42748561 (-) False LOC110501897
TU2073040 other downstream 200094 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 984136 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1123720 41447899 ~ 41465647 (-) True LOC110501886
TU2070925 other downstream 1775980 40736648 ~ 40813387 (-) True LOC110501878
TU2068898 other downstream 3644837 38944136 ~ 38944530 (-) True G1808299
TU2073346 other upstream 13569 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 86123 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 1919273 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 2082313 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3247616 45838750 ~ 45840982 (-) True G1815615

Expression Profile