RNA id: TCONS_00051664


Basic Information

Item Value
RNA id TCONS_00051664
length 2232
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_026508
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33570583 ~ 33574576 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGAGTGTTCTCTTCCTTCCCGTTGTCCTGCTCTTATGCCCACCAGCACTGGTCAGGGGTGACTGCTGGCTCATCGAGGGGGATAAAGGTTATGTGTGGCTGGCCATCTGCAGCCAGAACCAGCCACCGTATGAGACAATCCCACAGCACATCAACAACACAGTGCATGACTTGCGGCTTAATGAGAACAAGATCAAAGCTATTTTTTTCACCTCCTTGAGTCGCTTCTCAAATCTGACAGACCTCAACCTCACTAAGAATGAGATCTCATACATTGAAGATGGTGCTTTTGCAAGCCAGGCAAATCTACTGATTCTGCACCTTGGATATAACAAGTTAACCAACCTGACTGAAGGCATGTTGCGAGGTCTGGGACGAATGCAGTGTCTTTTCCTCCAGCACAACCTTATAGAAGTTATTGCCACTAATGCGTTCTGGGAGTGCCCTAGTCTCAGTAACCTGGACCTGACATCAAACAAGCTTGCCAGACTGGACCCATCCACTTTCACTGTATTGGGCAGGCTCATGGGATGTGAACTTGCAGGAAACCCGTTTCACTGCGGCTGTGAGCTCTACAGCTTTCTAACATGGTTAGAAGTCTTCAACAATGTTACACACACCTATGATCGACTTCAATGCGAGACCCCACGGGAGATGTTTGGCTATCCATTGCTGAGTCCTGTGGGTGGGCATGGAAGGAGTGCTCGTCACATCCTGTCCTCAGTGTGCCGGGATGGGGTGCTAATTCCTGGAATGACATCTCTACCACCTGATCCTGATTCTTCAGGCATGGAGCCTGGCATGTTTGAGCCCATTGGACCATACCATCAGCCCACAACTTCCTCGTCTCCCAGCATCAAACTGCAACATGTGTCCCTTTCCGCTGCATCTCTTCTGATCCAGATTCCAAATCCATACAGCAAAATGTACATCCTGGTACAGTACAATCAGAGCTTTGTGTCAGATGTGATGAACTTAAAGAATAAAAAGGAAATGATCACCCTTAACAAGCTCAAACCAAACACCAACTACACCTTCTGTGTGGCGTCTATACGAAACTCCCAACGCTACAATCAcacttgtttatatttttctacaCGAGCTCCAAACCCAGATGACTTGATGCCTCCACCATCCACGACTACCCACTACATAATGACCATTGTTGGCTGCTTATTTGGAATGCTCATTGTTCTTGGGTTTGTCTACTATTGCTTGCGAAGGCGTCGCCGTCAAGAAGAGAAAGAAAAATCCATCTGCGTGAAAAAGACTATTCTGGAAATGCGTTATGGACCAGAGGTTGCAGCAGCAGTTGCAAATGACCCCGCAGCTGTCCAGAAACTTCATGAGCAAAGCCACCATCAGCACCACCATGGCAAACTGCCCATCTCTGCCATGCTTGGCCATGGTTCTGCCAACACAAACCTCAGGGGGGATGATGGAAATGATGATGGTCGAGGATCAGCATCTGAGATTTCAACTATTGCAATGGAAGTGGACAAGGTCAACCAGATTATTAACAACTGCATTGATGCCCTCAAGCTAGACTCTGTTACAGCATCTATCCTGCCCTCCCCAAAGATCCCTCCTCCACCCCCTCTTCCCTTCCCAGCTCCTCTGCCTATTCAAAGACAGATGAGTGCTGATGCAGCTGTCATTGTTTCCTCTGCCAAGAGGCACTGCCGCCCATCTAGTGGGAAAGCTCGTGTGTACAGCTTAGATGTTCCGGAACCCCACAGCCCTGATCCATGCCACTATACAGACAAGGGAAGTCCATTGGGGTGTGGAGAACCCCTAGAGAGGCTCCCATTAGTAGGTAGTGATGGGATGGCCCTTCAGCAGCACCTGGAGGTGCACCCAGACTACCACTGTGCCGAGCATCGTCACTCAGTCCCTGCCCTTTACTACGAGGGCTCTCATGATTCCCCAGCCCAAAGGGTGTCCTTTCTTAAGCCGCTGTCACGCACCAAGAGAGACGCTGCTTCCTACTCTCAGCTCTCTCCACGTCACCACAATTACTCGGGCTACTCCTCAAGTCCAGAATACTCCACTGAGAGCACCTTGCGCATCTGGGAGCGCTTCCGACCCCACAGAAAAGGTCCACGTGAAGAGTCCTGTTATGTAACGGCGGGAAACGCCTTGCGAAAAAAGGTCCAGTTTGCCAAGGGGGAGGACTTGCATGACATCCTTGATTACTGGAAAGGTGTGTCAGCACAGCAAAAGCTGTAA

Function

GO: NA

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

Ensembl:

ensembl_id ENSDART00000190671

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051659 lncRNA downstream 132851 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051657 lncRNA downstream 142999 33425545 ~ 33427584 (-) True XLOC_026504
TCONS_00051655 lncRNA downstream 143651 33424024 ~ 33426932 (-) False XLOC_026504
TCONS_00051653 lncRNA downstream 147849 33420219 ~ 33422734 (-) True XLOC_026503
TCONS_00051651 lncRNA downstream 172046 33396705 ~ 33398537 (-) True XLOC_026502
TCONS_00051667 lncRNA upstream 108266 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00053065 lncRNA upstream 345314 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051675 lncRNA upstream 349368 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00051677 lncRNA upstream 363201 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00053066 lncRNA upstream 566385 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051660 mRNA downstream 76420 33461075 ~ 33494163 (-) False XLOC_026507
TCONS_00051661 mRNA downstream 100861 33465905 ~ 33469722 (-) True XLOC_026507
TCONS_00051658 mRNA downstream 132787 33432191 ~ 33437796 (-) False XLOC_026506
TCONS_00051654 mRNA downstream 142780 33423986 ~ 33427803 (-) False XLOC_026504
TCONS_00051652 mRNA downstream 147845 33420214 ~ 33422738 (-) False XLOC_026503
TCONS_00051668 mRNA upstream 199904 33773156 ~ 33880951 (-) False XLOC_026510
TCONS_00051670 mRNA upstream 218396 33791648 ~ 33901483 (-) False XLOC_026510
TCONS_00051669 mRNA upstream 218396 33791648 ~ 33901483 (-) True XLOC_026510
TCONS_00051671 mRNA upstream 348719 33921971 ~ 33941319 (-) False XLOC_026512
TCONS_00051672 mRNA upstream 348820 33922072 ~ 33941319 (-) False XLOC_026512
TCONS_00051656 other downstream 146255 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051635 other downstream 597049 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1383198 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2769925 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 3082489 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051678 other upstream 375417 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 449913 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 461940 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 464229 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051715 other upstream 473927 34047179 ~ 34047616 (-) True XLOC_026538

Expression Profile

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