RNA id: TU2073547


Basic Information

Item Value
RNA id TU2073547
length 437
lncRNA type intronic
GC content 0.43
exon number 3
gene id G1812500
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42702730 ~ 42703286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATATTATCTGTATATtgaccaatgatatcaggccataGCCGGCCATGATTATGAACACCTATCAAAACCTATAGTGCAGTGTATtcaaaccctgatgaagacaactTGCTGTCGAAACGGTGGAAAATACATAATTGCATCGGAACAATTATTATGAGGTGTTTCCTTTTCATTTAAAGTACAGCTACAGTTGAACAGGTCATGACAGCTATAGATGAACAGGTCAGGACAGTTATAGATGAACAGGGCAGGACAGCTATAGATGAACAGGTCAGGACAGCTACAGATGAACAGGTCAGGACAGCTacagATGAACAGGTCAGGACAGCTATAGATGAACAGGCCAGGACAGCTATAGATGAACAGGTCAGGACAGCTATAGATGAACAGGTCAGGACAGCTATAGATGAACAGGTCAGGACAAAGTGGGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073542 lncRNA downstream 6218 42696222 ~ 42696512 (-) True G1812495
TU2073513 lncRNA downstream 13751 42688210 ~ 42688979 (-) True G1812491
TU2073401 lncRNA downstream 40800 42661578 ~ 42661930 (-) True G1812395
TU2073353 lncRNA downstream 94230 42607591 ~ 42608500 (-) True G1812352
TU2073345 lncRNA downstream 97792 42604703 ~ 42604938 (-) False LOC110502155
TU2073558 lncRNA upstream 9982 42713268 ~ 42713577 (-) True G1812507
TU2073559 lncRNA upstream 11900 42715186 ~ 42715554 (-) True G1812508
TU2073560 lncRNA upstream 15813 42719099 ~ 42719320 (-) True G1812509
TU2073561 lncRNA upstream 16341 42719627 ~ 42719844 (-) True G1812510
TU2073562 lncRNA upstream 17001 42720287 ~ 42720518 (-) True G1812511
LOC110502155 mRNA downstream 96962 42603998 ~ 42605768 (-) False LOC110502155
XM_021579753.2 mRNA downstream 99281 42592218 ~ 42603449 (-) True LOC110501896
XM_036959343.1 mRNA downstream 802990 41798454 ~ 41899740 (-) True LOC110502152
XM_021579998.2 mRNA downstream 935552 41764963 ~ 41767178 (-) True LOC110502131
XM_021579743.2 mRNA downstream 958906 41702596 ~ 41743824 (-) True LOC110501888
XM_021579754.2 mRNA upstream 37333 42740619 ~ 42748559 (-) False LOC110501897
XR_005038838.1 mRNA upstream 37972 42741258 ~ 42748561 (-) False LOC110501897
XR_005038839.1 mRNA upstream 37972 42741258 ~ 42748561 (-) False LOC110501897
XR_002470270.2 mRNA upstream 37972 42741258 ~ 42748577 (-) True LOC110501897
XM_036959351.1 mRNA upstream 66967 42770253 ~ 42797492 (-) False LOC110501898
TU2073410 other downstream 24970 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 97710 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 313457 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1097499 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1237083 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1807121 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1970161 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 3135464 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4522265 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4697836 47401122 ~ 47402047 (-) True G1816929

Expression Profile