RNA id: TU2073837


Basic Information

Item Value
RNA id TU2073837
length 208
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1812770
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42989740 ~ 42989947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcgaactcaatcagcatgacagagtgatctccagctttgtcctcatcaacactcacacctgccttAACGagatcactgacatgtcagctggtccttttgtggcagggctgaaatgcagtggaaatgtttttgggggattcagttaatttgcagggcaaagagggactttgcaattaattgcaattcatctgatcactcttcataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073833 lncRNA downstream 5078 42984371 ~ 42984662 (-) True G1812766
TU2073819 lncRNA downstream 26881 42962622 ~ 42962859 (-) True G1812752
TU2073770 lncRNA downstream 104156 42884794 ~ 42885584 (-) True G1812707
TU2073649 lncRNA downstream 114156 42874714 ~ 42875584 (-) True G1812593
TU2073647 lncRNA downstream 115872 42873632 ~ 42873868 (-) True G1812591
TU2073842 lncRNA upstream 7512 42997459 ~ 42997665 (-) True G1812775
TU2073849 lncRNA upstream 21238 43011185 ~ 43011419 (-) True G1812782
TU2073850 lncRNA upstream 22033 43011980 ~ 43012192 (-) True G1812783
TU2073853 lncRNA upstream 28709 43018656 ~ 43018972 (-) True G1812786
TU2073869 lncRNA upstream 43041 43032988 ~ 43033415 (-) True G1812802
XM_021579756.2 mRNA downstream 166128 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 192248 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 192248 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 241163 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 241179 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 60457 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 69602 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 109385 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 163840 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 503338 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 311980 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 384720 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 600467 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1384509 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1524093 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1520460 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1683500 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2848803 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4235604 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4411175 47401122 ~ 47402047 (-) True G1816929

Expression Profile