RNA id: TU2073869


Basic Information

Item Value
RNA id TU2073869
length 428
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G1812802
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43032988 ~ 43033415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacctatgtaaatgtgatatttccgtttaaAATTTTTACTGAATTAGATTTTTTCataaatacctgtttttgctttgtcattatggggttttgtgtgtagattgatgatggaaaACTTTTAGAataaccattttagaataaggctgaaacgtaacaaaatgtggaaaaagtcaagaggtctgaatactttccgaatgcactgtatacgtGGAGTGTTACTTACTTGAGTCTTGAAAGTAGATATCATTGCCATTGTAGGCATTTTTTAACTTGTTTGTCATCACTCTCAGAGCCATGATCTGCTGGCGAATGAACGTGTCCGGCCTGGTGATGTCCACGCCCACCTCAGGGTTATTCACCTGATTGGTCAATCCGTCTTTCAGAACCTCTGGGAAATACCTGCCAGGCCAGACAATAACCATTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073853 lncRNA downstream 14016 43018656 ~ 43018972 (-) True G1812786
TU2073850 lncRNA downstream 20796 43011980 ~ 43012192 (-) True G1812783
TU2073849 lncRNA downstream 21569 43011185 ~ 43011419 (-) True G1812782
TU2073842 lncRNA downstream 35323 42997459 ~ 42997665 (-) True G1812775
TU2073837 lncRNA downstream 43041 42989740 ~ 42989947 (-) True G1812770
TU2073870 lncRNA upstream 1070 43034485 ~ 43034801 (-) True G1812803
TU2073872 lncRNA upstream 3323 43036738 ~ 43039368 (-) False G1812805
TU2073873 lncRNA upstream 4471 43037886 ~ 43039716 (-) True G1812805
TU2073922 lncRNA upstream 35182 43068597 ~ 43068810 (-) True G1812843
TU2073948 lncRNA upstream 57328 43090743 ~ 43091294 (-) True G1812869
XM_021579756.2 mRNA downstream 209376 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 235496 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 235496 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 284411 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 284427 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 16989 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 26134 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 65917 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 120372 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 459870 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 355228 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 427968 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 643715 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1427757 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1567341 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1476992 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1640032 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2805335 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4192136 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4367707 47401122 ~ 47402047 (-) True G1816929

Expression Profile