RNA id: TU2073870



Basic Information


Item Value
RNA id TU2073870
length 317
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1812803
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43034485 ~ 43034801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctcttggctgcatctctgatcagtattctccttgtatgagctgaaagtttagagggacggccaggtcttggtagattttcagtggtctgatactacttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaaggttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgattctTTCCGCGCTtgtaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2073869 lncRNA downstream 1070 43032988 ~ 43033415 (-) True G1812802
TU2073853 lncRNA downstream 15513 43018656 ~ 43018972 (-) True G1812786
TU2073850 lncRNA downstream 22293 43011980 ~ 43012192 (-) True G1812783
TU2073849 lncRNA downstream 23066 43011185 ~ 43011419 (-) True G1812782
TU2073842 lncRNA downstream 36820 42997459 ~ 42997665 (-) True G1812775
TU2073872 lncRNA upstream 1937 43036738 ~ 43039368 (-) False G1812805
TU2073873 lncRNA upstream 3085 43037886 ~ 43039716 (-) True G1812805
TU2073922 lncRNA upstream 33796 43068597 ~ 43068810 (-) True G1812843
TU2073948 lncRNA upstream 55942 43090743 ~ 43091294 (-) True G1812869
TU2073973 lncRNA upstream 63799 43098600 ~ 43098868 (-) True G1812886
XM_021579756.2 mRNA downstream 210873 42801020 ~ 42823612 (-) True LOC110501899
XM_036959351.1 mRNA downstream 236993 42770253 ~ 42797492 (-) False LOC110501898
XM_036959352.1 mRNA downstream 236993 42770253 ~ 42797492 (-) True LOC110501898
XR_002470270.2 mRNA downstream 285908 42741258 ~ 42748577 (-) True LOC110501897
XR_005038839.1 mRNA downstream 285924 42741258 ~ 42748561 (-) False LOC110501897
XM_021579758.2 mRNA upstream 15603 43050404 ~ 43056474 (-) True LOC110501902
LOC110502158 mRNA upstream 24748 43059549 ~ 43067135 (-) True LOC110502158
XM_021579759.2 mRNA upstream 64531 43099332 ~ 43101649 (-) True LOC110501903
LOC110502159 mRNA upstream 118986 43153787 ~ 43159661 (-) True LOC110502159
LOC118943590 mRNA upstream 458484 43493285 ~ 43498392 (-) True LOC118943590
TU2073410 other downstream 356725 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 429465 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 645212 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1429254 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 1568838 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 1475606 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1638646 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2803949 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 4190750 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 4366321 47401122 ~ 47402047 (-) True G1816929

Expression Profile