RNA id: TCONS_00051670


Basic Information

Item Value
RNA id TCONS_00051670
length 5848
RNA type mRNA
GC content 0.50
exon number 43
gene id XLOC_026510
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33773156 ~ 33901483 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTCGTGAAGACTGGCATTTGGTGTCTATAGAATGGCTCGGTTCGGAGATGAGGTGCCGTCCAGGTATGGCGGAGGACCGGGACACGCTCAAGGGGGCCCCGGCCGCGGCGGCAGCAGGCAGGGCGGCCCGCCGGGGGCTCAGCAGAGAATGTACAAGCAGTCAATGGCCCAGCGAGCCAGAACTATGGCCCTGTACAACCCTATACCGGTGCGGCAAAACTGCTTTACTGTCAACCGATCTCTGTTCATCTTCAGTGAGGACAACTTCGTGAGAAAATACGCCAAAAAGATCACCGAATGCACTCCATTTGAGTACATGATCCTGGCAACCATCATCGCTAACTGCATTGTCCTGGCCCTGGAACAGCACCTTCCAGACGGGGACAAGACACCTATGTCAGAGCGTTTGGAGGACACAGAACCCTACTTCATTGGCATTTTCTGTTTCGAGTCAGGCATTAAGATATTAGCTCTGGGATTTGCCTTTCACAAGGGCTCCTACCTACGAAATGGCTGGAATGTGATGGACTTTGTAGTGGTGCTTACTGGAATCCTGTCCACCGTGGGCTCAGACTTTGACCTGAGAACTCTACGTGCTGTTCGAGTGTTGAGACCTCTCAAGCTGGTGTCTGGGATTCCCAGCTTACAGGTTGTGCTGAAATCCATCATGAAGGCCATGATCCCTCTGCTTCAGATCGGTTTGCTGCTCTTCTTTGCCATCCTCATGTTCGCAATCATTGGTCTAGAGTTCTACATGGGCAAATTTCACACCACTTGCTTTGACAAGATCACCGATGAGATCCGGGAGGAGTTTCCATGTGGGGAGGAGGTTCCCGCTCGAATATGTCCTAATGGAACCGTATGCAAAAAGTACTGGCTTGGACCGAACTATGGTATTACTCAGTTTGACAACATCCTGTTTGCCGTCCTCACAGTCTTTCAGTGCATCACCATGGAGGGCTGGACTGATCTGCTGTACTATAGCAATGATGCTGCAGGGAGTGCATGGAACTGGATGTACTTCATCCCGCTCATCATCATTGGCTCTTTCTTCATGCTCAATCTTGTGCTGGGTGTGCTGTCAGGAGAGTTTGCCAAAGAAAGGGAGCGTGTGGAGAACAGGAGCGAGTTCCTAAAGCTGAAGCGTCAGCAGCAGATAGAGAGAGAGCTGAACGGATATCTGGAGTGGATCTGCAAAGCAGAAGAAGTGATTCTGGCTGACGAGGACAATGACCCAGATGACCGAATGCCCTTTGATGGCTCGAGAAGGAGGCCCACCATCAAGAAGAGTAAAACAGACCTGTTGGATGCAGAGGATGGAGATGGAGATATAGGTTCTCCGTTTGCACGGGGCAGTCTGAAAAGCTCCAAATTGGAGGGCTCTTCCTTCCATAAAAAGGAGCGTCGGCTAAGATTCTTCATTAGGCGTATTGTGAAGACTCAAGCATTCTACTGGACTGTTCTGTGTCTGGTGGGACTCAACACACTGTGTGTGGCTGTGGTTCATTACGACCAGCCCGAAACGCTCTCTGACTTCCTTTACTTTGCTGAGTTCATCTTTCTGGGCATCTTTATGTCAGAGATGTGTATTAAGATGTACGGACTGGGCACCAGACCTTATTTTCACTCCTCCTTCAACTGTTTTGACTGCATTGTCATTTGTGGCAGCATTTTCGAGGTGCTCTGGGCTATGATCCAGCCAGGAACCTCATTTGGGATCAGTGTGTTACGAGCTCTCAGGTTACTGAGGATCTTCAAAGTGACCAAGTATTGGGCGTCTCTGAGGAACCTGGTGGTGTCTTTGCTAAATTCCATGAAGTCCATTATCAGTTTACTCTTCCTCCTTTTCCTCTTCATTGTGGTCTTTGCTTTGCTGGGGATGCAGCTGTTTGGGGGACAGTTTAATTTTGAAGCCGGCACACCCCCAACAAACTTTGATACTTTTCCTGCAGCAATAATGACAGTGTTTCAGATCCTGACCGGTGAAGACTGGAACATGGTGATGTATGATGGGATCGAGTCTCAGGGTGGAGTCAAAAAGGGCATGGTCTTCTCAGTCTTCTTCATCGTTCTTACGCTCTTCGGCAACTACACACTGCTCAATGTGTTTTTGGCTATCGCTGTGGATAACCTGGCCAATGCACAAGAGCTGACCAAGGATGAACAGGAGGAAGAGCAGGCAGCCAATAAGAAAATGGCTCTTCAGACGGCCAAGGAAGTGGCTGAGGTCAGCCCTCTGTCTGCAGCAAACCTCTCTATCGCAGCTAAGGAGCAGCAGAAGAACCACAAAGGTTGTAAGTCGGTATGGGAGCAGCGCACTAGTGAGTTAAGACGACAGACCCTCGTGAACAGCAGAGAGGCTCTTTATAATGAGTTGGACCCTGAAGACCGTTGGAAGGTCTCATACTCCCGTCACATACGTCCCGACATGAAAACTCACCTGGACCGGCCGTTAGTCGTGGACCCTCAGGAGAACCGCAATAACAACACTAACAAAACCCGTCCGGGTGACGGCCAACCTCAGCATTCCCATCAGCTCCTACACAAACAGCCCAACTTCAATGAGGCCGAGACTGGAGGAGGTGGAGGGTCTGAGTCCTGGCCCGCACTGGAAAGAGGAGACTCAACAGGGTCCCGCCGCAGTCTTTTGGGCTCTGAGCACTATGAGGAGGGTAGAGAGTCCCACCGCAGACACCAGCACAGCCAGCACTGCAGTCAGGCCCGTCAACATCGCAAAGCTGCAGAGGGCGGTGGAGAGCCTGGAGGGAGGAGACACAGGAGTAAGGCCAAGGAAAGAGGACCTGAGTGTGAGCATTCAGATGGAGGGGAGCGGAAACACAGACGGCATCGGCATGAGGGTGAGGGGAGGAAAGAGAGAGGGGTACGACACCGAAACAGGAGGGATGGCCATGCAAGTGGCCCGACTCTCTCTACAACCCGTCCCATTCAGAAGACTCTGTCCAGGCAGGACAGTCAGTACAGCGAAGACCTGGACAATGCCATGAACAACAAACTTGCTACCCAGCCACATGATAGTCTGCTTAATCTGGCCAACACTGCCCACTCTGCCGGCCTGGCACATACTGGTACAGAGAGCAGCCTCATCCTCACCAACCCTTCCTCTACCATTGCAAATGTTACTAGCATCGGTCACCTGGGTATGAAACCTGAGTACACTGCCGTGGACATTCCTCCCATGTTCCCCTCCAGTAATGCCATTCTACAGGTCAATAAGAATGCCAACACGGAGCCTCTGCCAAAGAAGGAAGACACAAAGggtgacgatgatgatgatgagaaagATGACGGAGGGCCTAAACCCATGCCACCCTACACCTCAATGTTCATTCTGACCACCACCAACCCATTTCGGAGATTGTGTCACTATATCGTCACACTGAGATATTTTGAGATGTGTATTCTACTGGTTATTGCTATGAGCAGTATTGCCCTGGCTGCTGAAGACCCTGTCTGGCCTGAATCTCCCCGCAACAATGTCCTACGATACTTTGACTATGTGTTCACTGGTGTGTTCACCTTTGAGATGCTCATTAAGATGGTAGATTTAGGTCTTGTCCTGCATCAAGGCTCATACTTTCGTGATCTGTGGAACATCCTGGACTTTATAGTGGTTAGTGGTGCCCTGGTGGCGTTCGCCTTCACAGGAAGCAGCAAAGGGAAAGACATCAGTACTATCAAGTCTCTACGTGTGCTTCGAGTACTGCGGCCGCTGAAAACCATCAAACGTCTGCCAAAACTGAAGGCTGTCTTTGACTGTGTGGTGAACTCTCTGAAGAATGTGTTGAACATCCTCATCGTCTACATGCTCTTCATGTTCATCTTCGCTGTGGTGGCTGTGCAGCTCTTTAAGGGACGTTTCTTTTACTGCACTGATGAATCCAAAGAGTTTGAGCGCGACTGCAGGGGCGAGTATCTGGTCTATGAAAGAGATAACGAAGTGAGGTCACAGAAGCGGGAATGGAAGAAATACGATTTCCACTACGACAACGTGCTCTGGGCCCTTCTCACCCTCTTCACCGTTTCTACGGGAGAGGGGTGGCCGCAAGTGCTAAAACATTCAGTAGATGCGACCTACGAGAATCAGGGCCCGAGCCCAGGTTACCGGATGGAAATGTCCATCTTTTACGTGGTGTACTTCGTGGTCTTCCCCTTCTTCTTCGTCAACATCTTCGTGGCTCTTATCATCATTACTTTCCAGGAGCAAGGAGACAAAATGATGGAGGACTATAGCCTGGAAAAGAATGAGAGAGCCTGCATAGACTTTGCCATCAACGCTAAGCCGCTCACACGGCACATGCCCCAGAACAAGCAGACCTTTCAGTACCGCATGTGGGAGTTTGTGGTGTCTCCTCCATTTGAATACACCATCATGGCCTTGATCGCGCTCAACACTATTGTCCTTATGATGAAGTATGATGGAGCATCGCTTACTTATGAAGATGTGCTAAAATACCTGAACATAGTGTTCACCTCTCTATTCTCCATGGAGTGCATATTGAAGATCATAGCCTTCGGAGCATTGAACTACTTCAAAGATGCCTGGAACATCTTCGACTGTGTGACTGTACTTGGCAGCATCActgatattttagtcacagagCTGGGGAACAACTTCATAAATCTGAGTTTTCTAAGGCTCTTCAGAGCTGCTCGTCTCATTAAGTTGCTCAGGCAGGGTGAAACCATACGCATCCTGCTCTGGACTTTTGTCCAGTCTTTCAAGGCTCTGCCGTATGTGTGCCTACTCATCGCCATGCTGTTCTTCATCTACGCCATCATTGGCATGCAGCTGTTTGGGAACATTAAGATCGAGGAGAACAGTGACAGTGCCATTACCCAGCACAACAACTTCAGGACTTTTTTCCAGGCCCTAATGCTGCTCTTTAGGAGTGCTACAGGTGAGGCATGGCATGACATCATGCTGTCATGTCTGGGAAAGAAGCCGTGTGATATTCTCTCTGATAACCCGAAGCCAGAATGCGGGAGCGAGTTTGCCTACCTCTACTTTGTCTCCTTCATCTTCCTCTGTTCATTTCTGATGCTGAATCTGTTCGTGGCTGTGATCATGGATAATTTTGAATACCTGACGCGTGACTCCTCTATCCTGGGACCCCATCACCTGGACGAGTATGTGAGGATCTGGGCAGAATATGATCCTGCTGCTTGTGGCAGAATCAGTTACAGGGATATGTATGAGATGCTCAGGCACATGTCTCCTCCGTTAGGCCTGGGGAAGAAGTGCCCTGCACGGGTTGCCTACAAGAGACTGTTGCGGATGGATCTGCCGGTTGCCGATGACAACACAGTGCACTTTAATTCTACCCTTATGGCCTTAATCCGAACCGCTCTGGACATCAAGATCGCCAAGGGAGGTGTAGATAAGCACCAGATGGATGCTGAATTAAGGAAGGAGATGATGGCGATATGGCCTAATCTCTCTCAGAAGAACCTGGACCTGCTGGTGACTCCTCACAAGTCGACAGACCTGACAGTAGGAAAGATCTACGCTGCCATGATGATCATGGAGTATTATCGGCAAAGTAAAGCCAAACGGACACAAGCTCTCCATGATGAGCAGAATCGAACGCCATTAATGTTTCAGCGTCTGGAGCCGCCATCTCCTAGCCAGGATGTGGGACCAGGACTCACTGGCCTTCCTGACACACAAATGCACCCTGCAAATCATCTGCCTGTTGATGAAAGGATCCCAGAGAGCCAATCATGGGTGACAGCGCGAGCACAGGAGATTTCTCAAAAAGCAGGCAACTGGAGTCCAGAGGGCCAACATCCAGATGACACCACAGACAACAGAAGGCAGTCTCAG

Function

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-26 Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in calcium ion import and chemical synaptic transmission. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 42; hereditary ataxia (multiple); and migraine (multiple). Orthologous to human CACNA1A (calcium voltage-gated channel subunit alpha1 A).

Ensembl:

ensembl_id ENSDART00000144774

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051667 lncRNA downstream 100894 33681518 ~ 33690754 (-) True XLOC_026509
TCONS_00051659 lncRNA downstream 353916 33435754 ~ 33437732 (-) True XLOC_026506
TCONS_00051657 lncRNA downstream 364064 33425545 ~ 33427584 (-) True XLOC_026504
TCONS_00051655 lncRNA downstream 364716 33424024 ~ 33426932 (-) False XLOC_026504
TCONS_00051653 lncRNA downstream 368914 33420219 ~ 33422734 (-) True XLOC_026503
TCONS_00053065 lncRNA upstream 17083 33918566 ~ 33919195 (-) True XLOC_026511
TCONS_00051675 lncRNA upstream 21137 33922620 ~ 33935438 (-) False XLOC_026512
TCONS_00051677 lncRNA upstream 34970 33936453 ~ 33938821 (-) True XLOC_026512
TCONS_00053066 lncRNA upstream 238154 34139637 ~ 34141181 (-) True XLOC_026572
TCONS_00051762 lncRNA upstream 278324 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00051666 mRNA downstream 217072 33570583 ~ 33574576 (-) True XLOC_026508
TCONS_00051664 mRNA downstream 218396 33570583 ~ 33573252 (-) False XLOC_026508
TCONS_00051671 mRNA upstream 20488 33921971 ~ 33941319 (-) False XLOC_026512
TCONS_00051672 mRNA upstream 20589 33922072 ~ 33941319 (-) False XLOC_026512
TCONS_00051673 mRNA upstream 20589 33922072 ~ 33941875 (-) False XLOC_026512
TCONS_00051674 mRNA upstream 20904 33922387 ~ 33934788 (-) False XLOC_026512
TCONS_00051676 mRNA upstream 30896 33932379 ~ 33935200 (-) False XLOC_026512
TCONS_00051656 other downstream 367320 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051635 other downstream 818114 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051585 other downstream 1604263 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051529 other downstream 2990990 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 3303554 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051678 other upstream 47186 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 121682 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 133709 34035192 ~ 34035631 (-) True XLOC_026534
TCONS_00051712 other upstream 135998 34037481 ~ 34037881 (-) True XLOC_026535
TCONS_00051715 other upstream 145696 34047179 ~ 34047616 (-) True XLOC_026538

Expression Profile

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