RNA id: TU2074255



Basic Information


Item Value
RNA id TU2074255
length 203
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1813143
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43402683 ~ 43402885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cattactgtCGGGGTAAAAACCCGAGGCAAGGCTGACTAAGATCCCCAgatgttccatgaacgccttccagatcctttatgtgaactggggaccctgaTCAGACACTATAAATCaagcaccccgtagtgccggaagacgtgtgttaACAGGTTCTCCGCAGTTTGTAGGgacgtagggagaccgggcaaatggaggagacgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2074204 lncRNA upstream 13308 43385961 ~ 43389375 (+) True G1813094
TU2074235 lncRNA upstream 43128 43358434 ~ 43359555 (+) True G1813123
TU2074165 lncRNA upstream 111577 43284273 ~ 43291106 (+) True G1813071
TU2074107 lncRNA upstream 191920 43210127 ~ 43210763 (+) True G1813017
TU2074098 lncRNA upstream 201382 43201047 ~ 43201301 (+) True G1813008
TU2074256 lncRNA downstream 55 43402940 ~ 43403259 (+) True G1813144
TU2074260 lncRNA downstream 4219 43407104 ~ 43407319 (+) True G1813148
TU2074261 lncRNA downstream 5073 43407958 ~ 43408439 (+) True G1813149
TU2074280 lncRNA downstream 21199 43424084 ~ 43424641 (+) True G1813163
TU2074289 lncRNA downstream 32835 43435720 ~ 43487927 (+) True G1813171
XM_021579760.2 mRNA upstream 170550 43230424 ~ 43232133 (+) True LOC110501904
XM_021579762.2 mRNA upstream 176290 43213840 ~ 43226393 (+) False LOC110501905
XM_021579761.2 mRNA upstream 176290 43216341 ~ 43226393 (+) True LOC110501905
XM_036959353.1 mRNA upstream 364689 42884711 ~ 43037994 (+) False LOC110501901
XM_036959354.1 mRNA upstream 365753 42884711 ~ 43036930 (+) False LOC110501901
XR_002470272.2 mRNA downstream 98908 43501793 ~ 43546277 (+) False LOC110501907
XM_021579767.2 mRNA downstream 98908 43501793 ~ 43549935 (+) False LOC110501907
XM_021579768.2 mRNA downstream 98908 43501793 ~ 43549935 (+) False LOC110501907
XM_021579769.2 mRNA downstream 98908 43501793 ~ 43549935 (+) False LOC110501907
XM_021579770.2 mRNA downstream 98908 43501793 ~ 43549935 (+) False LOC110501907
TU2074041 other upstream 252299 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 666816 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 678569 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 1013396 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 1062291 42329273 ~ 42340392 (+) False LOC110501889
TU2074610 other downstream 705359 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 706435 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 706435 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 706435 44109320 ~ 44110867 (+) True G1813442
TU2074675 other downstream 915273 44318158 ~ 44320111 (+) True LOC110502169

Expression Profile