RNA id: TU2075211


Basic Information

Item Value
RNA id TU2075211
length 766
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G1813962
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43513914 ~ 43514679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaataactcttccattttcAACCTGGCAGCTCGTTGGTGGGTGTGCAAATTTGCATTCCTCATCACTCCGTGAGCAAGTTCCTCTCTGAAACTGCCGACACACTTCCAACGTCAGCCATTTTGTGTCCCTTACTGAAGATATATTGAGAGCCATGTCAAGAGGTTCCAATCGACCGCTGCCAGTCCAATGTATCAGTTGAGTTGACTCTTAACTCAAAAAACGGCAACACATAAAAAAAAAGTTCACAACTTTTGTCTCTGTCTGATTAGTGCTTGAAAAGTTTACAAATCATATGAAGCAACCAGACTGGCCTCACTGCATCAGCTGGGAGGAAGGCTAATCAATCAACGAGCAATCACTCATCAATCAGTTTGCACCAATGGGAAACCTCTGGAAGGGTTGAGGGCTTGCTCTGTGACACAACAGTGTGtctatcctcctccactgacaAGGACTCTCTCATTAATGGTGTGTCGAGGCAATGGCGCTCCTTGAAAGAATATTAATGAAGACTTGCCTGGTATTGACTTTGCCAACTTCTCACAATTTGTGCTTTGGTAGTTCTCCCCTCCAGTAAATCTTTCCCCTTGGGATACCTTAGCCACTGGAGTTGTTCAGAAATAAATTGGAGGCGGCTGAAGATTTGCAGCTGAAGTATCCCGGCACTGCTCAGACCTGGCCTAGAAGGGAGGGTTGGCTTCCCATGCACATTTAGACCAGAGAGCAGGTTGAAGTTGAAGATGTTATGTGAAAAGCACTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2075210 lncRNA downstream 3616 43510070 ~ 43510298 (-) True G1813961
TU2075209 lncRNA downstream 4068 43509606 ~ 43509846 (-) True G1813960
TU2075207 lncRNA downstream 6096 43507609 ~ 43507818 (-) True G1813958
TU2075205 lncRNA downstream 9013 43504647 ~ 43504901 (-) True G1813956
TU2075203 lncRNA downstream 11337 43502301 ~ 43502577 (-) True G1813954
TU2075219 lncRNA upstream 10581 43525260 ~ 43525475 (-) True G1813970
TU2075220 lncRNA upstream 11882 43526561 ~ 43526852 (-) True G1813971
TU2075225 lncRNA upstream 16232 43530911 ~ 43531314 (-) True G1813976
TU2075228 lncRNA upstream 18776 43533455 ~ 43533665 (-) True G1813979
TU2075229 lncRNA upstream 19233 43533912 ~ 43534151 (-) True G1813980
LOC118943590 mRNA downstream 15522 43493285 ~ 43498392 (-) True LOC118943590
LOC110502159 mRNA downstream 354253 43153787 ~ 43159661 (-) True LOC110502159
XM_021579759.2 mRNA downstream 412265 43099332 ~ 43101649 (-) True LOC110501903
LOC110502158 mRNA downstream 446779 43059549 ~ 43067135 (-) True LOC110502158
XM_021579758.2 mRNA downstream 457440 43050404 ~ 43056474 (-) True LOC110501902
XM_021580017.2 mRNA upstream 71280 43585959 ~ 43587743 (-) True LOC110502160
XM_021580018.2 mRNA upstream 96870 43611549 ~ 43612567 (-) True LOC110502161
XM_036959595.1 mRNA upstream 153224 43667903 ~ 43669453 (-) True LOC118943640
XM_036959079.1 mRNA upstream 165990 43680669 ~ 43681964 (-) True LOC118943591
XM_036959080.1 mRNA upstream 174992 43689671 ~ 43690838 (-) False LOC118943592
TU2073410 other downstream 836154 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 908894 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 1124641 42386822 ~ 42389273 (-) True G1812079
TU2071948 other downstream 1908683 41604974 ~ 41605231 (-) True G1811042
TU2071828 other downstream 2048267 41447899 ~ 41465647 (-) True LOC110501886
TU2075666 other upstream 995728 44510407 ~ 44553420 (-) True LOC110502171
TU2075825 other upstream 1158768 44673447 ~ 44673888 (-) True G1814480
TU2077141 other upstream 2324071 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 3710872 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 3886443 47401122 ~ 47402047 (-) True G1816929

Expression Profile