RNA id: TU2075873



Basic Information


Item Value
RNA id TU2075873
length 240
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1814527
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44748867 ~ 44749106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCCAGGTAGGTCTACATACTTCATTACAAAGATTCACCAGGTTTTGGCAAATGGGTTGGATTTAATCGTGTGTGGTTAATGACTTTCAGTAAATCCTGAGGAAATCAACGTCATTACATGAATCGCCTCCAAGTGAATTTTATGTTCCCTGTAGTTTAATTATCTTCATCGGGTGCACATCTAACCCTATACCTCAAATATAGATAAGATGCTAGCTTGTTTACTGAAACCAGAATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2075867 lncRNA downstream 3844 44744124 ~ 44745023 (-) True G1814521
TU2075866 lncRNA downstream 4915 44742772 ~ 44743952 (-) True G1814520
TU2075859 lncRNA downstream 8480 44740133 ~ 44740387 (-) True G1814514
TU2075854 lncRNA downstream 14054 44734611 ~ 44734813 (-) True G1814509
TU2075853 lncRNA downstream 16010 44732425 ~ 44732857 (-) True G1814508
TU2075880 lncRNA upstream 6296 44755402 ~ 44755642 (-) True G1814534
TU2075884 lncRNA upstream 6860 44755966 ~ 44756630 (-) True G1814537
TU2075888 lncRNA upstream 12464 44761570 ~ 44761807 (-) True G1814541
TU2075892 lncRNA upstream 15460 44764566 ~ 44764877 (-) True G1814545
TU2075894 lncRNA upstream 17005 44766111 ~ 44766313 (-) True G1814547
XM_036959404.1 mRNA downstream 84004 44659569 ~ 44664863 (-) False LOC110501923
XM_021579797.2 mRNA downstream 84004 44659908 ~ 44664863 (-) False LOC110501923
XM_036959403.1 mRNA downstream 84004 44659908 ~ 44664863 (-) False LOC110501923
XM_021579796.2 mRNA downstream 84004 44661070 ~ 44664863 (-) False LOC110501923
XR_002470302.2 mRNA downstream 112535 44634884 ~ 44636332 (-) True LOC110502136
XM_021579802.2 mRNA upstream 168373 44917479 ~ 44926432 (-) False LOC110501924
XM_021579800.2 mRNA upstream 168373 44917479 ~ 44928069 (-) False LOC110501924
XM_036959405.1 mRNA upstream 168373 44917479 ~ 44928070 (-) False LOC110501924
XM_021579799.2 mRNA upstream 168373 44917479 ~ 44935920 (-) False LOC110501924
XM_021579801.2 mRNA upstream 168373 44917479 ~ 44939556 (-) True LOC110501924
TU2075825 other downstream 74979 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 195447 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2071107 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2143847 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2359594 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 1089644 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2476445 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2652016 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2722188 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 3312943 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile