RNA id: TU2076005



Basic Information


Item Value
RNA id TU2076005
length 292
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1814650
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44883859 ~ 44884150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actaaacagaatactaccctgtcactgtatgattgTATGAATCTTATTAGCATCATAACACTAaataatgtgtgtagttttagtcaagaattagaacaaggactttctgttccttgttagaaacgaatggagctatcgtcagaccggctggaatactgtgttccttacaggacatcctGTCCCCactcagggaggggagagaccttgggcttgtagtagattgtttaacaggtggcagacaatgtgagAAGACTTGTGAACTATGTTGCCATTGTATctgaggaggagggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2075902 lncRNA downstream 112083 44771526 ~ 44771776 (-) True G1814555
TU2075894 lncRNA downstream 117546 44766111 ~ 44766313 (-) True G1814547
TU2075892 lncRNA downstream 118982 44764566 ~ 44764877 (-) True G1814545
TU2075888 lncRNA downstream 122052 44761570 ~ 44761807 (-) True G1814541
TU2075884 lncRNA downstream 127229 44755966 ~ 44756630 (-) True G1814537
TU2076007 lncRNA upstream 205 44884355 ~ 44884649 (-) True G1814652
TU2076008 lncRNA upstream 665 44884815 ~ 44885023 (-) True G1814653
TU2076021 lncRNA upstream 11258 44895408 ~ 44895642 (-) True G1814665
TU2076025 lncRNA upstream 13651 44897801 ~ 44898375 (-) True G1814669
TU2076580 lncRNA upstream 31186 44915336 ~ 44915614 (-) True G1815143
XM_036959404.1 mRNA downstream 218996 44659569 ~ 44664863 (-) False LOC110501923
XM_021579797.2 mRNA downstream 218996 44659908 ~ 44664863 (-) False LOC110501923
XM_036959403.1 mRNA downstream 218996 44659908 ~ 44664863 (-) False LOC110501923
XM_021579796.2 mRNA downstream 218996 44661070 ~ 44664863 (-) False LOC110501923
XR_002470302.2 mRNA downstream 247527 44634884 ~ 44636332 (-) True LOC110502136
XM_021579802.2 mRNA upstream 33329 44917479 ~ 44926432 (-) False LOC110501924
XM_021579800.2 mRNA upstream 33329 44917479 ~ 44928069 (-) False LOC110501924
XM_036959405.1 mRNA upstream 33329 44917479 ~ 44928070 (-) False LOC110501924
XM_021579799.2 mRNA upstream 33329 44917479 ~ 44935920 (-) False LOC110501924
XM_021579801.2 mRNA upstream 33329 44917479 ~ 44939556 (-) True LOC110501924
TU2075825 other downstream 209971 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 330439 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2206099 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2278839 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2494586 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 954600 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2341401 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2516972 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2587144 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 3177899 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile