RNA id: TU2076178



Basic Information


Item Value
RNA id TU2076178
length 683
RNA type TUCP
GC content 0.42
exon number 1
gene id G1814811
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45110547 ~ 45111229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcgtgtttgcatctcaatgtgaaaaaaaactgtttgcatgttcttcacaaagagggcaacagatgctactgagccagatgtctatgtgtcaggggagaagctccaggtggtatccgattttaagtaccttggcatcatacttgattccaacctctcttttaaaaagcatgtgaaaaaggtaattcaaataaccaaattcaacctagctaatttccgatttatacgaaattgtttgactacagaggtagcaaaactgtacttcaaatctatgatactcccccacttaacatactgcttgactagttgggcccaagcttgctgtacaacattaaaacctattcagtctgtctacaaacaggctctcaaagtgcttgataggaagcccaatagccatcatcattgtcacattcttagaaagcatgagctcttgagttggggaaatcttgtgcaatacaccgacgcatgtcttgtattcaagatccttaatggcctggctccccctccactcaatatttttgttaaacagaaaacccagacatatggcagcagatccacaaggtctgccatgagaggtgactgtatagttcccctaaggaaaagcacctttagtaaatctgcattctctgtgagagcttcccatgtctggaatacactgccatcagacacacataactgcaccacat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2076172 lncRNA upstream 14811 45095382 ~ 45095736 (+) True G1814805
TU2076157 lncRNA upstream 33509 45076819 ~ 45077038 (+) True G1814790
TU2076155 lncRNA upstream 35714 45074542 ~ 45074833 (+) True G1814788
TU2076144 lncRNA upstream 55135 45055199 ~ 45055412 (+) True G1814777
TU2076136 lncRNA upstream 66897 45043364 ~ 45043650 (+) True G1814769
TU2076179 lncRNA downstream 1181 45112410 ~ 45112727 (+) True G1814812
TU2076183 lncRNA downstream 9567 45120796 ~ 45121074 (+) True G1814816
TU2076184 lncRNA downstream 10090 45121319 ~ 45121539 (+) True G1814817
TU2076187 lncRNA downstream 12811 45124040 ~ 45124258 (+) True G1814820
TU2076191 lncRNA downstream 19047 45130276 ~ 45130496 (+) True G1814824
XM_036959408.1 mRNA upstream 88377 45009747 ~ 45022170 (+) False LOC110501931
XM_036959409.1 mRNA upstream 88377 45009747 ~ 45022170 (+) False LOC110501931
XM_021580002.2 mRNA upstream 122703 44983911 ~ 44987844 (+) True LOC110502137
XM_021579795.2 mRNA upstream 451978 44647142 ~ 44658569 (+) False LOC110501922
XM_036959401.1 mRNA upstream 451978 44647146 ~ 44658569 (+) False LOC110501922
XM_021579820.2 mRNA downstream 61662 45172891 ~ 45175477 (+) False LOC110501942
XM_021579822.2 mRNA downstream 61764 45172993 ~ 45175477 (+) False LOC110501942
XM_036959411.1 mRNA downstream 64666 45175895 ~ 45251964 (+) False LOC110501941
XM_036959410.1 mRNA downstream 139553 45250782 ~ 45252926 (+) True LOC118943613
XM_036959413.1 mRNA downstream 150986 45262215 ~ 45267589 (+) True LOC110502139
TU2074893 other upstream 536626 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 602496 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 738624 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 790436 44318158 ~ 44320111 (+) True LOC110502169
TU2074607 other upstream 999680 44109320 ~ 44110867 (+) False G1813442
TU2076159 other downstream 61746 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 410691 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 613918 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 670270 45781499 ~ 45782536 (+) True G1815137
TU2077403 other downstream 1047430 46158659 ~ 46169901 (+) True LOC110501947

Expression Profile