RNA id: TU2076749



Basic Information


Item Value
RNA id TU2076749
length 791
lncRNA type intronic
GC content 0.36
exon number 3
gene id G1815303
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45182192 ~ 45233653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actgtctctgttgtattatgacagacaagctagatctactgtctccgttgtataatgacagaccagctagatctaccgtctctaatatataatgacagaccagctttatctcctgtctctattaacttatgacagaccagctagatctactgtcactattaacattaggacagaccagctagatctactgtcactattacattatgacagactagctagttctactgtcactattacattatgacagaccagctaaatctaccgtcactattacattattacagacaagctagatctactgtctctaatacattatgacagactagctggatcttcattctctattatactatgaccgACCAgcaagatctcctgtctctattattttattgtagaacagctagatctactgttactattacatcatgacagaccagctagatctaccaccTCTATTATACTATGATAGATCAGCTAAATCTTCTCTCtctaatattatgacaggccagctggaataacattctctattatactatgatagaccagctagatctactgtctctattatattattatagaccagctagatcttctgtcactattaaattatgacagaccagctagatttaccgTCTCTAaaatataatgacagaccagctagatctactgtcactattacattatgacagaccagctagatctactgtcactattacattaacagaccagctagatctaatgtctgtaatgtattatgacagaccagctggaactacattatctattatact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2076748 lncRNA downstream 6088 45185687 ~ 45190837 (-) False G1815303
TU2076755 lncRNA downstream 9357 45182192 ~ 45187568 (-) False G1815303
TU2076696 lncRNA downstream 24710 45165049 ~ 45172215 (-) True G1815256
TU2076702 lncRNA downstream 74486 45122212 ~ 45122439 (-) True G1815262
TU2076700 lncRNA downstream 76216 45118988 ~ 45120709 (-) True G1815260
TU2076781 lncRNA upstream 4646 45223160 ~ 45232024 (-) True G1815317
TU2076763 lncRNA upstream 5118 45223632 ~ 45231205 (-) True G1815303
TU2076790 lncRNA upstream 24283 45242797 ~ 45243013 (-) True G1815325
TU2076854 lncRNA upstream 125016 45343530 ~ 45365162 (-) True LOC110502174
TU2076868 lncRNA upstream 156979 45375493 ~ 45414973 (-) True G1815396
LOC118943612 mRNA downstream 229791 44965636 ~ 44967134 (-) True LOC118943612
XM_021579806.2 mRNA downstream 234046 44959757 ~ 44962879 (-) False LOC110501930
XM_036959406.1 mRNA downstream 240860 44954300 ~ 44956065 (-) True LOC110501928
XM_021579804.2 mRNA downstream 246555 44947662 ~ 44950370 (-) True LOC110501926
XM_021579805.2 mRNA downstream 251638 44943212 ~ 44945287 (-) True LOC110501927
XM_036959415.1 mRNA upstream 145976 45364490 ~ 45365813 (-) False LOC110502174
XM_036959084.1 mRNA upstream 201371 45419885 ~ 45432246 (-) True LOC118943595
XM_021579814.2 mRNA upstream 238712 45457226 ~ 45458628 (-) True LOC110501936
XM_036959416.1 mRNA upstream 301333 45519847 ~ 45520832 (-) True LOC118943614
XM_021579813.2 mRNA upstream 314583 45533097 ~ 45543990 (-) True LOC110501935
TU2075825 other downstream 523037 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 643505 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2519165 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2591905 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2807652 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 620236 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 2007037 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2182608 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2252780 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2843535 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile