RNA id: TU2076763


Basic Information

Item Value
RNA id TU2076763
length 555
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1815303
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45182192 ~ 45233653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgacagaccagctagatctactgtctctaatacattatgacagaccagctagatctactgtctctattacattatgacagaccagctagatctactgtctctattatattattatagaccagctagatcttctgtcactattattttatggcagaccagctagatctactgtctctaatacattatgacagagaagctccgtctgctgtctctattatattacaacagaccagctttatctcctgtctctattaacttatgacagaccagctagatctactgtctctaatacattatgacagaccagttagatctactgtctctgttgtattatgacagaccagctagatctactgtctccattatataatgacagaccagctagatctaccatctctactatataatgacagaccagctagatctactgtcactaatacattatgacagaccagctagatcaactgtcactattacatcatgacagaccagctagatctaccacctctattaaattatgacagaccagctagatctactgtctctaatacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076773 lncRNA downstream 844 45210074 ~ 45222788 (-) True G1815311
TU2076780 lncRNA downstream 2307 45217239 ~ 45221325 (-) True G1815316
TU2076778 lncRNA downstream 3139 45215661 ~ 45220493 (-) True G1815315
TU2076749 lncRNA downstream 5118 45196925 ~ 45218514 (-) False G1815303
TU2076750 lncRNA downstream 6758 45207932 ~ 45216874 (-) False G1815303
TU2076790 lncRNA upstream 11592 45242797 ~ 45243013 (-) True G1815325
TU2076854 lncRNA upstream 112325 45343530 ~ 45365162 (-) True LOC110502174
TU2076868 lncRNA upstream 144288 45375493 ~ 45414973 (-) True G1815396
TU2076873 lncRNA upstream 158492 45389697 ~ 45449161 (-) True G1815400
TU2076876 lncRNA upstream 161091 45392296 ~ 45433726 (-) True G1815402
LOC118943612 mRNA downstream 256498 44965636 ~ 44967134 (-) True LOC118943612
XM_021579806.2 mRNA downstream 260753 44959757 ~ 44962879 (-) False LOC110501930
XM_036959406.1 mRNA downstream 267567 44954300 ~ 44956065 (-) True LOC110501928
XM_021579804.2 mRNA downstream 273262 44947662 ~ 44950370 (-) True LOC110501926
XM_021579805.2 mRNA downstream 278345 44943212 ~ 44945287 (-) True LOC110501927
XM_036959415.1 mRNA upstream 133285 45364490 ~ 45365813 (-) False LOC110502174
XM_036959084.1 mRNA upstream 188680 45419885 ~ 45432246 (-) True LOC118943595
XM_021579814.2 mRNA upstream 226021 45457226 ~ 45458628 (-) True LOC110501936
XM_036959416.1 mRNA upstream 288642 45519847 ~ 45520832 (-) True LOC118943614
XM_021579813.2 mRNA upstream 301892 45533097 ~ 45543990 (-) True LOC110501935
TU2075825 other downstream 549744 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 670212 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2545872 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2618612 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 2834359 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 607545 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 1994346 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 2169917 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2240089 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2830844 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile