RNA id: TCONS_00004924


Basic Information

Item Value
RNA id TCONS_00004924
length 5571
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_002650
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14525184 ~ 14540443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATCTTTCAGTATGGTTTGATGTGTGTTGTAAATGATGGCTCGCCGCACACTAAAAGCAGTTCTCATTGATCTGAGCGGGACTCTTCATATCGAGGACACTGCAGTTCCTGGTGCACAAGAGGCTTTAGCGCGATTAAGACAGGCTCCAGTTGCTGTCAAATTCGTGACCAATACCACAAAGGAATGTAAAAGGACGTTGTTTGAGCGTCTGCGTGGGCTGAACTTTGACCTCCAGGAGCAGGAGATCTTTACATCTCTCACTGCCGCACGTAATCTAGTGGAGCAGAAAGCAGTGCGCCCCCTGCTGATGGTGGAGGACAGTGCTCTGGAGGACTTCACAGGTTTGGAAACTTCAGATCCTAATGCAGTTGTAATAGGATTAGCGCCTGACCACTTCAACTACCAGACACTCAACAAAGCCTTCCAACTCATTTTAGATGGTGCCCCCCTGATTGCCATCCATAAAGCACGATACTATAAAAAGAAGGATGGTTTGGCTTTGGGACCAGGCCCATTTGTGACTGGATTAGAGTATGCCACTGACACAAAGGCCACAGTTGTGGGTAAACCAGAGAAAGGCTTCTTTCTAGAGGCCTTGCGAGATCTCAACTGCTCACCAGAGGAGGCTGTGATGATCGGAGATGATGCCAGAGATGATGTTGGTGGGGCTCAGAATGCAGGGATGCTGGGAATTTTAGTAAAGACTGGTAAATACAGACCTGCTGATGAGGGTAAAATTAACCCACCACCTCACCTGACATGTGCCAGCTTTCCAGAGGCAGTCAATTATATACTTGATCATCTCTTAGGATCTAAATAAGTTAGGTTTAAAACAATACAAAGGCAAAACAAAGTAATGGTACCCTTATGTAGCATGTACATTATATTGGTTATCTGAGAAAAATATTATAGATTAATAAAGTTGATGTAttcctttaaaatttaaagagcaagacgtgtgtttttttattttttatttcagcataTAATCAAAATTGTATtgaccttttaaaaatgtattaatcaatgaaagcaatttttttttgttatttactttaatatatattGTCAGTTAATTGATTGCagtttaaagaaaaacaaaacaagaaaaaatagtacaaaagtaggcAGTAAATGGTGGATGTGCAATAAAAAGCATTAGTTTGGtgcaggggcgttgctagggtcgaaagggataaggggcttagccccaaagacaCCCCAATCCACCCCcattaaaaaagctaaaatacCACCACTTTCATAAGGTAATCTACTTTTATAATAGAtttataaatggtttaataataaaaagggtttttgagttgacagttttttaaaaataaattttgaagctttgtgacttgtaacaccaaaaaggaaaaaaaaaaaacattgataaattatcacacttctcatttactagtctgttgtgagccatatcatacctcttgagcctcctatctcctctcctgatttgcagtttctgtttgttttttgaaaatgtaattttctgcatgtcttcaaatctgaaaataatataaattttatagTGTGAGTTAGTATCCAATttgatacaaagctacaaacatgttcagttggacagagtgattaactgaggtgtagtgttgtcaaaatACTGAAATTTCTAAAgtcaataccttgcaaaatattgatattcaataggctactatttttgacataataacaattttatcaaaaatagtacaaaaaataaaaataaagatttatatgctagaaatgcgtttacttcaaatttctttagagggagattttttttcagttttcctcaaaataatgtgatgtgggcattgtagcactttaaaagcgtgtaatgcctgtttcattcattcattgagcagaaattccatatatgcctcacaaaagtagtagaacattccaggaaatccttaatatggatgaaggcatccagctattgctgtagttgaatgaaaataagatctgaataaacataaaaaggctttaactgatcatttacacgactgcgataataaatgtttatacagttaaagtcagaattattattcccctttgaattttattttcttatttaaatatttcccaaatgaagtttaacagaacaaggaaatttccactgtatgtctgacaatatttttttcttttgaataaattcttatttgttttatttcagctagaataaaagctatattacattttttaaaaacccttttagggtcaaaattattagcccttttaagcaaattttttttctgatagtctacagaacaaaccatcgttatacaacaactcgcctaattaccctaaccttcctttaaaggtcactttaagctgtatagaagtgtcttgaaaaatgtctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagtaattagagatgagctattaaaactattatgtttaaaaaaaaggtgttgagaaaatctctccgttaaacagaaattagggaaaaaaataaacaggggggctaataattcaactgtctTCTTCCAGCCATCTCAGGTATTtttataagaaagtcgatttataatcccCTGCTAACTGACAtggcatgttacagtagaatgcTATACAATAtgctagatcacaggtgtcaaactcagttccaaaagggctgcagctctgtacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaactaaactgtgcagggcttcggccctccagggattgagtttgacacccctgtgctAGATGCATGaaccaccgcggtgactgaagctctgcacaagacttttggccagcggagaaattaaaatggtcgtgccgaactgagtctggttctctcaagttttttttttctacactcccatcaggtgaagttttttttccctctccgctgtcgccactggctcgcattgttcaggattggtagagctacgcatcgatgaatttgctcttcagtgtttgaactctcagtaatgattaaatcacactgaactgagctaaactgaactaaactgaacttaaacactaaaaaaatgaactacactgttccagttactatgaccatttatgtgaagctgctttgacacaatctacattgtaaaagcgctatacaaataaagctgaattgaattgaatgaactcactgtgatttaactattacagaaacagatgtgactggctatatcatatctagataaatatgcctagatatctatatcatatttAGAAAGCAAGAACAATTTAAGTTTTTCTGACTAATTCGCATGTATGCATTGAAATGATGCACATTTTAtggattacagttattttatttcaccaaaactacacacattttatactgtggaaacaacTGTTAAGCTTCATCAGaagttagaactattcagtttcgtgaaagagttgtattattaccttaTTAGCTCAGCTCttcataataatgaataaatgaagtgcagtggcggaattttttttaaacatcctgtgacaacagtgccactcccacctgccggtagatacaggtactgctgaactGCTGACCCGACACAAACACTGCGTTAAGTGGAATGTGCGTGATGTACAGTACGCGGTAATTTTCAGTACTTATATAACAAAATGAATGTTATAcaccatatttttatttatgctttttttatttatgcttttgacaCTACATCatgggcttaagcccccaaagcccctcCCTCGCAACGCCACTGGTTTCGTGCCTAGCTGATGTTTCAGACAGACTCATACTCTTTCTCCCAGGCTGTGTATCTATCCATCAGACATCTGGCTGATGGTTTGGTGTGAACAATCACGTCCAGGAAATCTGCTGTGGTCACAGTTTCTAGTTCAATAACCGGCATATTGGACTGACCTGTGAAGATGCATGGCGTAATGGAGACTGTGAATTGTGGGCGAAACAGGATTTCGTGATGAAACAGCAGTTTAATGTTGTTCAGAATGGGATGGCGGGATATTTCTTACCTTCAATGTGGTTTTCAAGGGCGTCAAATATTTTGCGCACAGGTCTCATAGCTGCCTCCTTACAGACCAACCTGATATCTGACCCAGAGTAACCTCCCGTCTCCTGAAATACAGAAGATCTAAAATTGTCAGTATAtttgcctgtctgtctatctgaaTGTCTGTAAGTTATTGAGTGTTTTTCTATCTGTTCAACTGTCTGTCTCTACCTCTCAATTTTTAATTCAGGTGTTTCAATTGGACCCATTGCCACAGGTATATACAGTAAAGAAATTAGCTATTTAGGCTACATCCACACAAAACCCCtatcaaaattagttttttttttttttttttttttgcatagtctTAAAAATATCTGCATACACATGAAACCACTGAACCTAACAAAAATGATGTAATATAcattagtgtttctcaaccacgttccaccAACACTGCTGaatatgttttggatgtctccagGCCcgaattggctaatcgggaggactgagagaattcccggtgggccggtccgttttttggccgcgagggccggtgtccctagctccagaatctgttgctctcagcagtcacactttttaaatttatttatttacttgaccacagcctttttattgattattttaccgTAATCATCATTCATAAAACAGTTGTTGTGGTCGagcggttagcacgttaggttaagggtgctttcacacctacacttttgtttcgaaacgtgtctcgtttgcccagttagcgcggttcatttggcatatgtgaacagggcaatcgtgctctgttccgcgccaaagtaatcgctccgagatcgcttgaacgaggtggtctcggctcgattaaaacgaACCCTGGGGCagttcgattacagtgagaaagcgatctgatccgagcgcagttatatcacagtgttttatggatatgtaataggcttacggctatatgaagagagaattatgattatggcgggaagttttgcgagtctccggatgcccgcaaacgagtgatgatctcccggtaatctcgcgtctccctcccggtcctcaaataggcatcgtcgcacacccttctcacccctccccaccgcatctctcctcagacacatcgcgcgcgcaccctgtcaatcaccatcaaaccaccacctctcctgacagcttagcgggacgctgcaaaataaaccctgacactctgaccaatgtaaggagagtttactcgcacgtgacttgttttagctcttttggtctgattagaaactttgcagtgtgaaagcgaaccgctccaagagcaaagagcaacaatgtaacatttgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcaccctaagacgcCGCGGACCtgggttcgatcctcgttagagtaatttagtgttttatgttgataagacatataatactgttagggttgttgaacatttgatgttctaaagcagctgttttctcaaaaaaa

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-37 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human HDHD2 (haloacid dehalogenase like hydrolase domain containing 2).

Ensembl:

ensembl_id ENSDART00000186501

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006012 lncRNA downstream 1223211 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 2626609 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3192071 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 3737535 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 3810957 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006013 lncRNA upstream 494607 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 496573 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 546011 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 546011 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 547195 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004921 mRNA downstream 36666 14263684 ~ 14488518 (-) False XLOC_002649
TCONS_00004923 mRNA downstream 36712 14420964 ~ 14488472 (-) True XLOC_002649
TCONS_00004917 mRNA downstream 752323 13475830 ~ 13772861 (-) True XLOC_002645
TCONS_00004916 mRNA downstream 752337 13460130 ~ 13772847 (-) False XLOC_002645
TCONS_00004915 mRNA downstream 1128464 13305627 ~ 13396720 (-) True XLOC_002644
TCONS_00004926 mRNA upstream 6327 14542726 ~ 14545658 (-) True XLOC_002651
TCONS_00004927 mRNA upstream 11542 14547941 ~ 14556978 (-) True XLOC_002652
TCONS_00004930 mRNA upstream 334737 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004929 mRNA upstream 334737 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004931 mRNA upstream 336533 14872932 ~ 14929630 (-) False XLOC_002654
TCONS_00004922 other downstream 37030 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 593488 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 912936 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004918 other downstream 918041 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004913 other downstream 1220001 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004928 other upstream 195884 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004937 other upstream 401428 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004948 other upstream 800911 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 1081817 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 2541034 17077433 ~ 17083377 (-) False XLOC_002675

Expression Profile

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