RNA id: TU2078120


Basic Information

Item Value
RNA id TU2078120
length 3898
lncRNA type read_through
GC content 0.50
exon number 4
gene id G1816471
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46767078 ~ 46771482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattAAGAAAGCATGTTGTGAAAATAATGACAACAAACCAGACACATGAATCTTTACACAAACAGAATGTCCTCAAAATATCTCCAGGATGACAGATGTCACCATTCATCAGAACAGTCTGTCAGAAAGTTGCTTGGTTGTCTCTCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGTCTCCATGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGTCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGTCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTTCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTTCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTTCCTCCCTGCAGTAGCCGGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCGGTCCCCAGGGTGTTGCTTGGTTGCGCCTCCCCGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCCGCAGTAGCCAGTCCCCAGGGTGTTGCTTGTTTGCGCCTCCCTGCAGTAGCCAGTCCCCAGGGTATTGCTTGGTTGCGCCTCCCTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGTTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCATCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCTTGGTTGCCTCCCTGCAGTAGCCAGTCCCCAGGGTGTTGCCTCCCTGCAGTAGCCAGTTCTCAGTGTTCATACAATACATATTACAAGGCTTCTTTCCTTTTGttctgttgtcttcagacagtaacATGTTAATATGTGGTTAGTCTGGAGGTTCATCTGAAACATCTTCAGTCTCTTCCCACACATGAACCATGTACCCAGAGCAAGAGGCTCTATCTGGGGCCCAATAATATTAACTTACATAACTCTGTACATACTTACAGCAGGCTGTTGCCTGGGCCAACAGGATGCACTATGGTTACAGAGGAGTGGTCTTTACATAGTAGGTATGATGGATGATGGTAGAGGAACAACATGTACTGCAACCTCTCACTCATTAGAGAAGTCTTCTGAGAGAATCATGTAATGTCACCGCCTGGCCCTCATCAGACCCCATGTCTCCATGTGATCTGTGAGCTTTTTATTCATAATATCTTCAGCAAAAATACCTCCAGATTCCACTAGATACAAACAATGAAAGAGTATTCATGTtgcagccacacagagagaagggCTATGCTCCAAATGTTTAAAGTGTGAACATGTTCACATCCCTCCACTGATTagaaaggaaatgactggtataacaaatatggtggaaactcccaGTAGACCATGCCTCCaccaatacaatgcttttagatttgtgGGAAGTAGTGAACAAGCGCATACTTCAGGAGATATTGGGACGTGCACAAGGGCTAATCATTCAACCTGACGACCTCCTCAGCCAACCAGCTGCCTCACATCAACACAAGTAAAATCAGACAGGAACAGGCATCTGGGGAATACTTAAGGCCTCATTTAAAATGTGGCAAGTTGATCATGTTAAATCCCAATGATGTTCTTTGCCAGAGTATTAACTGATTACGTAGTGTTGGAATAATGTATTACATATTTTATACGTTAAAGTCCTCTGTTTTGGACTGTTTCAACAGTTATTTTTGGAATGGACTGCTGAGACCAAGGAGGACAAGAAATGTGTCTTCAACTCTTCATGCCATAAAGTACTAATAAGTGTATGATATAAAATTGTAACATAACATTGTTAAAGGAACCCAGCTGGAATGAACAATCAgtccctcccatctcctccacaGTGTTGGCATTAGCCTCCTCCTCCAGTCCCCTGCCTGCTACTCCAGTCCCATCTAGTCCCCTGCCTGCTCCTCCAGTCCCCTGCCTGCTCCTCCAGTCCCATCTAGTCCCTTGCCTTCCTGGTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCCTTCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGCCTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGAACCATCACTTTTCTGACTGTACAACCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCACCAAGACCTATCCAAGACCCATCACTATTCTAACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCACACCAAGACCCATCACTATTCTGACTGTAGAGCCCCACCAAGACCCATCACAATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCACACCAAGACCCATCACTATTCTGACTGTAGAGCCCCACCAAGACCCATCACAATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCACACCAAGACCCATCACTATTCTGACTGTAGAGCCCCACCAAGACCCATCACAATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACAGCCCCAGCAAGACCATCACTATTCTGACTGTACAGCCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCATCACTATTCTGACTGTACCATCACTATTCTGACTGTACAGTCCCACCAAGACCCATCACTATTCTGACTGTACAGCCCCACCAAGACCTATCACTATTCTgctgagacagggagaaagagacaccAAGAGGTTTCTGCTGTGTGGTCCATAGTCCATTTCTGCTGTGTGGTCCATAGTTCATTTCTGCTGTGTGGTCCATAGTCCATTTCTGCTGTGTGGTCCATAGTCCATTTCTCATTCTCTGAGcggctctccctcctcctcctcctttgttTACATGTCACATAGACGGGGTCCAGGTGTTTACATCTTGTGGACATTTTGTTGTTTACATATTGTAGGCCACATAAATGGGGTCCAGCTGGTCAGCCAGGAAGCCATCCCGTAGGTgcatcctctgtttctctcctcttgaGTTGATAGGTATAACCCCTggatccaccaccaccaccacacccactATCAGGTAGTGGTCCTCCAGAACCACGTTAGTCACCAGGGGAACTAGGTCCAGAGCCTCCTGCTCTGACCCAGACAGctccactactaccaccaggAGGTTGGTCCACGTGAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078101 lncRNA downstream 22858 46743784 ~ 46744220 (-) True G1816454
TU2078098 lncRNA downstream 26455 46740410 ~ 46740623 (-) True G1816451
TU2078095 lncRNA downstream 30037 46736746 ~ 46737041 (-) True G1816448
TU2078092 lncRNA downstream 32084 46734789 ~ 46734994 (-) True G1816445
TU2078091 lncRNA downstream 33013 46733726 ~ 46734065 (-) True G1816444
TU2078121 lncRNA upstream 1308 46772790 ~ 46773094 (-) True G1816472
TU2078123 lncRNA upstream 6777 46778259 ~ 46795109 (-) False G1816474
TU2078127 lncRNA upstream 6777 46778259 ~ 46803112 (-) False G1816474
TU2078128 lncRNA upstream 6777 46778259 ~ 46822782 (-) True G1816474
TU2078148 lncRNA upstream 53383 46824865 ~ 46825473 (-) True G1816492
XM_036959427.1 mRNA downstream 610106 46119388 ~ 46156972 (-) True ints6
XM_036959085.1 mRNA downstream 738572 46011115 ~ 46028506 (-) True LOC118943596
XM_036959423.1 mRNA downstream 1040684 45702953 ~ 45726394 (-) True LOC110501932
XM_036959422.1 mRNA downstream 1040685 45702953 ~ 45726393 (-) False LOC110501932
XR_002470275.2 mRNA downstream 1179366 45582551 ~ 45587712 (-) False LOC110501943
XM_036959443.1 mRNA upstream 98349 46869831 ~ 46974131 (-) False spopla
XM_036959444.1 mRNA upstream 98349 46869831 ~ 46974132 (-) False spopla
XM_021579869.2 mRNA upstream 270743 47042225 ~ 47061327 (-) True LOC110501995
XM_036959446.1 mRNA upstream 315389 47086871 ~ 47103805 (-) False LOC110501994
XM_036959445.1 mRNA upstream 315389 47086871 ~ 47103828 (-) True LOC110501994
TU2077141 other downstream 926096 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2093190 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 2213658 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 4089318 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 4162058 42604703 ~ 42605020 (-) True LOC110502155
TU2078613 other upstream 454069 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 629640 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 699812 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 1290567 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 1497305 48268787 ~ 48291496 (-) True G1817668

Expression Profile