RNA id: TU2078148


Basic Information

Item Value
RNA id TU2078148
length 609
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1816492
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46824865 ~ 46825473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCAAGACCATCCAGAcaacccagaccatccagacaaaaaaacatccacactatccagacaacccagaccatccagacaaACCAAAACATCCAGAACATCCTTACCATCCAGATTACGCAAACCATAGAGACTattcagaccatccagactaccccaACCATCCAGAATAAGCATACATTCAacactacccaaaccatccagaccattcagactatccagactaccaaaaccatccagactatccagactaccAAACCATCCGGACCATCTATTCTATGCAGACCATCCAGACtgtccagactacccaaaccatagaGGCTATtaagaccatccagactaccaaaAACCATCCAGAATGAGCAGACATtgcagactacccaaaccatcctaACTATCCAGACAATCCAAACCATCCAGAATGAGCAGACATtgcagactacccaaaccatccagactattCAGACAAACCAAAACATCCAGAACATCCGTACAGCCGTATCAAACCCAAATTATCCAGACAATTCAGACTACCTGAACCATCCAGACTACCTGaaccatccagactatccagaccATACAGACAAACCAAAACATCTAGAACATCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078128 lncRNA downstream 2083 46778259 ~ 46822782 (-) True G1816474
TU2078127 lncRNA downstream 21753 46778259 ~ 46803112 (-) False G1816474
TU2078123 lncRNA downstream 29756 46778259 ~ 46795109 (-) False G1816474
TU2078121 lncRNA downstream 51771 46772790 ~ 46773094 (-) True G1816472
TU2078119 lncRNA downstream 53383 46767078 ~ 46771482 (-) False G1816471
TU2078182 lncRNA upstream 16290 46841763 ~ 46842095 (-) True G1816525
TU2078186 lncRNA upstream 21188 46846661 ~ 46847882 (-) True G1816527
TU2078293 lncRNA upstream 44302 46869775 ~ 46871090 (-) False spopla
TU2078292 lncRNA upstream 44369 46869842 ~ 46871090 (-) True spopla
TU2078305 lncRNA upstream 55432 46880905 ~ 46886278 (-) True G1816624
XM_036959427.1 mRNA downstream 667893 46119388 ~ 46156972 (-) True ints6
XM_036959085.1 mRNA downstream 796359 46011115 ~ 46028506 (-) True LOC118943596
XM_036959423.1 mRNA downstream 1098471 45702953 ~ 45726394 (-) True LOC110501932
XM_036959422.1 mRNA downstream 1098472 45702953 ~ 45726393 (-) False LOC110501932
XR_002470275.2 mRNA downstream 1237153 45582551 ~ 45587712 (-) False LOC110501943
XM_036959443.1 mRNA upstream 44358 46869831 ~ 46974131 (-) False spopla
XM_036959444.1 mRNA upstream 44358 46869831 ~ 46974132 (-) False spopla
XM_021579869.2 mRNA upstream 216752 47042225 ~ 47061327 (-) True LOC110501995
XM_036959446.1 mRNA upstream 261398 47086871 ~ 47103805 (-) False LOC110501994
XM_036959445.1 mRNA upstream 261398 47086871 ~ 47103828 (-) True LOC110501994
TU2077141 other downstream 983883 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2150977 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 2271445 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 4147105 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 4219845 42604703 ~ 42605020 (-) True LOC110502155
TU2078613 other upstream 400078 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 575649 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 645821 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 1236576 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 1443314 48268787 ~ 48291496 (-) True G1817668

Expression Profile