RNA id: TU2079332


Basic Information

Item Value
RNA id TU2079332
length 1926
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1817380
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47683477 ~ 47712089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgtgcttttcagcAAAAATGATTATATACAATTCTtaccaccaacaaaatgttgaatatttggggcataaaatcattgaagctctgcagattttattgtgaggatacagaatcaatagaccatttattttggtattgccctcaggtagcctgtttctggtctcaggttcaggaatggctgaaaatgcacagcattgatctaaaattgaccctagaaatagtactgttaggagagaccgggtcagtcaattactaatagtCTTAGTAAAAgtttatcttcaactcgcaagctgctctattcgattagatagattgaaattgtacgttaaacatcataGCATAGTTGAAAGTTATGTGTTGTGTAGAAAcacgaagtgggtggccagcagagatagatgggatgggctgagggaagctgagggttgggatgggatgggctgagggaagctgagggttgggatgggatggactgagggaagctgagggttgggatgggatggactgagggaagctgagggttgggatgggatgggctgagggaagctgagggttgggatgggatgggctgagggaagctgagggttgggatgggatggactgagggaagctgagggttgggatgggatggactgagggaagctgagggttgggatgggctgagggaagctgagggttgggatgggatgggctgagggaagctgagggatgtggaattggagacaggtgggagtggagttgctgtgtgagagatagtatgaaggtcaaaggtaaaggtacaacaacaaaaaagtctaaacaaaataaaaagtacatttgaatgacactaagagggcagtgtttttacaactaatgccagTTTTCCTGAggttgatgccgtgcaggtgtttgtacacatgcatatacacacactctcattcaaatcaacacatacaagaacacacacatacatgtaatagtgccagacatgcacacaagcatatacagttggcattgctgttatgattttagttgtccttgatgtcctttgttttaaataAAAAACTTTTGGGgtttttctgttgttgttttcttctgtcttttccttttgtCTCTTTAGttatcttggttgttggtgcattgggggggttcttgaaggtggggaatggaattaattgtatttttgtttcattcttCCTGGGGGGGGACtttgggaggggtctcgaatggttgagggacagctattggggaactgtgggggggattGAGCAGGGCATTGGCcttggatgcttctgtgtgtcgctctgaatgggaacctattggatgactggtatgatgtagttattgagcggcttcactgcaagtacagtggggcaaaaaaaaattgcaaataaattcattaaaaatcctacaatgtgattttctggatttttttgttctcatcttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaattattttttgccccattgtatattgtatgtttcgaatattcatatatatattttttattgtaaaaacgtaaaaaaataaataataataataataaggaccGAGGaggtatggtatatggccaacataccacggctgttcttaagcacaacgCATCGCGGAGTTCCTGGatacagccattagccgtggtatattggccatataccacaaacccccaaggtgccttattgctattataaactggttaccaacgtaattagaaccaTAAAAactaatgttttgtcatacccgtggtatacggtctgatataccacgggtgtcaaccaatcagcattcagggcttgttAACAAAGAGAAACCCTCCCCCCTTAAGTTTACTGCCGTTCTGTTCTGCCAATGTATAGGAAAACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2079326 lncRNA downstream 5507 47677276 ~ 47677970 (-) True G1817376
TU2079315 lncRNA downstream 37698 47644370 ~ 47645779 (-) True G1817368
TU2079300 lncRNA downstream 67492 47615182 ~ 47615985 (-) True G1817353
TU2079299 lncRNA downstream 69058 47614216 ~ 47614419 (-) True G1817352
TU2079284 lncRNA downstream 106248 47576989 ~ 47577229 (-) True G1817341
TU2079363 lncRNA upstream 17268 47729357 ~ 47730208 (-) False G1817406
TU2079365 lncRNA upstream 17268 47729357 ~ 47730208 (-) True G1817406
TU2079378 lncRNA upstream 38604 47750693 ~ 47751260 (-) True G1817416
TU2079411 lncRNA upstream 128602 47840691 ~ 47840910 (-) True G1817448
TU2079415 lncRNA upstream 140272 47852361 ~ 47852641 (-) True G1817451
XM_021579839.2 mRNA downstream 47837 47628880 ~ 47635640 (-) True LOC110501961
XM_036959453.1 mRNA downstream 50828 47628880 ~ 47632649 (-) False LOC110501961
XM_036959450.1 mRNA downstream 129868 47477628 ~ 47553609 (-) False cfap65
XM_036959451.1 mRNA downstream 129868 47477628 ~ 47553609 (-) False cfap65
XM_036959449.1 mRNA downstream 423011 47177045 ~ 47260466 (-) False trpm2
XM_036959458.1 mRNA upstream 21130 47733219 ~ 47834252 (-) False ptprna
XM_036959457.1 mRNA upstream 21130 47733219 ~ 47834254 (-) True ptprna
XM_036959461.1 mRNA upstream 184968 47897057 ~ 47972131 (-) True tmem198a
XM_021579829.2 mRNA upstream 345762 48057851 ~ 48064453 (-) False LOC110501953
XM_036959466.1 mRNA upstream 427672 48139761 ~ 48220042 (-) False LOC110501956
TU2079216 other downstream 210093 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 281430 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 456831 47225551 ~ 47226646 (-) True G1816841
TU2077141 other downstream 1842495 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 3009589 44673447 ~ 44673888 (-) True G1814480
TU2079567 other upstream 349960 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 556698 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 746937 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 757509 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 915275 48627364 ~ 48627846 (-) True G1818059

Expression Profile