RNA id: TU2079878


Basic Information

Item Value
RNA id TU2079878
length 201
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1817786
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48419727 ~ 48419927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TgcaaaaagttttgagaatgacacaaatattaattttcacaaagtctgctgcctcagtttgtacgatggcaatttgcatgtactccagaatgttatgaagagtgatcagatgaattgcaattaactacaaagtccctctttgccatgcaaattaactgaatcccccaaaaatatttcaactgcatttcagccctgccatcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2079865 lncRNA downstream 9061 48410385 ~ 48410666 (-) True G1817773
TU2079856 lncRNA downstream 22992 48392315 ~ 48396735 (-) True G1817765
TU2079815 lncRNA downstream 40415 48378776 ~ 48379312 (-) True G1817740
TU2079802 lncRNA downstream 52366 48367151 ~ 48367361 (-) True G1817727
TU2079789 lncRNA downstream 67466 48352022 ~ 48352261 (-) True G1817714
TU2079906 lncRNA upstream 20096 48440023 ~ 48440260 (-) True G1817813
TU2079925 lncRNA upstream 35303 48455230 ~ 48455431 (-) True G1817830
TU2079934 lncRNA upstream 41059 48460986 ~ 48461265 (-) True G1817839
TU2080109 lncRNA upstream 85523 48505450 ~ 48543729 (-) True LOC110502188
TU2080167 lncRNA upstream 162635 48582562 ~ 48582970 (-) True G1818030
XM_036959466.1 mRNA downstream 199685 48139761 ~ 48220042 (-) False LOC110501956
XM_036959467.1 mRNA downstream 199685 48139761 ~ 48220042 (-) False LOC110501956
XM_036959468.1 mRNA downstream 199685 48139761 ~ 48220042 (-) False LOC110501956
XM_036959469.1 mRNA downstream 199685 48139761 ~ 48220042 (-) True LOC110501956
XM_021579829.2 mRNA downstream 355274 48057851 ~ 48064453 (-) False LOC110501953
XM_021580043.2 mRNA upstream 85518 48505445 ~ 48645921 (-) False LOC110502188
XM_036959601.1 mRNA upstream 542285 48962212 ~ 48964633 (-) True LOC118943644
XM_036959089.1 mRNA upstream 1050175 49470102 ~ 49480960 (-) True LOC118943599
XR_005038852.1 mRNA upstream 1702961 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 1702961 50122888 ~ 50243944 (-) False prkag3b
TU2079734 other downstream 128231 48268787 ~ 48291496 (-) True G1817668
TU2079567 other downstream 356083 48062049 ~ 48063644 (-) True LOC110501953
TU2079216 other downstream 946343 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 1017680 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 1193081 47225551 ~ 47226646 (-) True G1816841
TU2079931 other upstream 39099 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 49671 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 207437 48627364 ~ 48627846 (-) True G1818059
TU2080631 other upstream 705587 49125514 ~ 49126117 (-) True G1818393
TU2080662 other upstream 745824 49165751 ~ 49166367 (-) True G1818417

Expression Profile